Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00220 ATGGATTCCAAGAACATGGCAAAGAAGACCATGAAGAAGACAAAGGGTCGTCAGAAGATTGAGATAAAAAAGATGAGCAACGAGCATAACCTTCGGGTCACCTTCTCCAAGCGTCGAACTGGGATTTTCAAGAAAGCCAGCGAACTTGCTACCCTCTGTGGTGTGGACATTGCTGTCATCATGTTTTCACCGAGTAACCAGGTTTTCTCCTTCGGAAGCCCTAATGTGGATCCTGTTATCCAACGCTACACGGCGCAAGGTCCACCTCCGCTTCTCACTCTGGACCTGAACGAGGCTCACAGCACCGTGGACGAGGGAGAACTACATGCGCAACTCAACAACTTGTCCGACCAGATGGCGGCGGAGAAGAAGCATGAAGAGGCTCTGAAACGTCTGATGAAGGATGTGGAGGAACACTCGTGGTGGGCCATGCCGATAGATAGCATGAACGATGCGCAGCTTGAGAAGTACAAGAAGATGTTGGAGGATCTGAAGGAATGTGTGAATGAAAAACGTGAGAAGCTCCTCCTTCAGACCACTTTTGCTTACAACTCACCGACTCAGTTTCTCACTGGTGGAAACAACTCCTTTTCCAGTGTTGATTACTCTGAAACTATACATACGCCATTGTCGTTGTAG 639 0.4851 MDSKNMAKKTMKKTKGRQKIEIKKMSNEHNLRVTFSKRRTGIFKKASELATLCGVDIAVIMFSPSNQVFSFGSPNVDPVIQRYTAQGPPPLLTLDLNEAHSTVDEGELHAQLNNLSDQMAAEKKHEEALKRLMKDVEEHSWWAMPIDSMNDAQLEKYKKMLEDLKECVNEKREKLLLQTTFAYNSPTQFLTGGNNSFSSVDYSETIHTPLSL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00220 212 Gene3D - 27 89 IPR036879 GO:0003677|GO:0046983
Vimu3g00220 212 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Vimu3g00220 212 SUPERFAMILY SRF-like 16 92 IPR036879 GO:0003677|GO:0046983
Vimu3g00220 212 FunFam Agamous-like MADS-box protein AGL62 27 91 - -
Vimu3g00220 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Vimu3g00220 212 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Vimu3g00220 212 Coils Coil 112 132 - -
Vimu3g00220 212 CDD MADS_MEF2_like 16 83 IPR033896 GO:0000977|GO:0045944
Vimu3g00220 212 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Vimu3g00220 212 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Vimu3g00220 212 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Vimu3g00220 212 PANTHER MADS BOX PROTEIN 17 170 - -
Vimu3g00220 212 Coils Coil 154 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00220 Vimu-Chr3 1841577 1842215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00220 11 212 Type I MADS-box Gene Family AT5G60440 40.097 4.52e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu3g00220 SRF-TF 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00220 - - gmx:100808929 239.195