Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00219 ATGAACAACACAAGTGATTCATCTGGGTACCTTGGCTCCAGCAACATAAGTGGCTTTGGCATGGGCATCGGAATTTCAATTGGGATTCTTCTGCTTATCACAACCATCACACTCACCTCCTACTTCTGCACCAGATCACAGGTACCAACTGCTCCAAGGAGAAGAACTTCTTCTGGCCCACAATTCCTCGAGCCACAGCACACAATAGTTGATGTTGGGTTGGATGAAGCCACAATCATGAACTACCCCAAGATGCTGTACTCTGAAGCCAAGCTAAGAAAATCTGATTCCACAGCAACAAGCTGTTCCATATGTCTCGGAGATTATAAAAGTTCTGATGTGCTAAGGGTTTTGCCAGATTGTGAACATGTCTTTCACCTCAATTGCATAGACCCATGGTTGAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCCCCTATCCCGACACCTCTCTCGACACCTCTTGCAGAAGTTGTCCCGTTAGCAACAAGGCGAGATTAA 504 0.4643 MNNTSDSSGYLGSSNISGFGMGIGISIGILLLITTITLTSYFCTRSQVPTAPRRRTSSGPQFLEPQHTIVDVGLDEATIMNYPKMLYSEAKLRKSDSTATSCSICLGDYKSSDVLRVLPDCEHVFHLNCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00219 167 SUPERFAMILY RING/U-box 78 149 - -
Vimu3g00219 167 Pfam Ring finger domain 101 144 IPR001841 -
Vimu3g00219 167 CDD RING-H2_EL5-like 101 144 - -
Vimu3g00219 167 FunFam E3 ubiquitin-protein ligase ATL6 64 149 - -
Vimu3g00219 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 148 IPR013083 -
Vimu3g00219 167 SMART ring_2 102 143 IPR001841 -
Vimu3g00219 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vimu3g00219 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00219 Vimu-Chr3 1833407 1833910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00219 6 164 C3H Transcription Factor Family AT2G35910 59.877 2.86e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00219 - - gmx:100796149 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02239 6 19584731 19585643 Vimu3g00219 3 1833407 1833910 PCT