Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00216 ATGGCGTTGCGGACTGCTTACCTGAAAGAACACGAAGGAATTGTTCACAATTCTGTTGGACAGTTGTCATCTGGAACCTCAGCTCCATGGTGGAATGGCTTAGGATCTCAACCAGTTTATGGAGATTATTGTGGCCAAAACAAGCCCTTTTCGCTGGAGTTTTCGAACTACATCGACCCATTTTCTGGTGGTAAGCAAGCAGTACGAGGAGCGGAGCCAGTGATCGATAGAGGACATGCAACCCAGTTTTCCATCTTTCCAGATGAATGTAAAATGTTAGGCAATGCCCAAAATCCTCAGCCAGCCGTAGGACTGCAGCCATCACTTGCTCAGCCCACCAACAATTTCGACATAGGGTTTAATCAGCCTACGATGTGTGCACCATATCCCCGTGTGGATCAATTCTGTGGGATCTCAGCTTATGCACCTCAAATTTCGGGACGTATATTGCTTCCGCATAACATGGCATCTAATAATGGACCAACCTACGTGAATGCTAAGCAGTACCATGGAATCATCAGACGAAGGCAGTCACGTGCTAAGGCTGTTCTTGAGAATAAATACATCAAACGTCGCAAGCCTTACATGCATGAGTCACGCCATCTACATGCAATGAGGCGACCAAGAGGAAATGGTGGTCGCTTCTTGAACACAAGAAAGTCCAATAATGGAAATGGTGGAAATGATGCTGATGTGAATAAAATGGGTGGCCTACAATTTCTGTCCAGTACCTCTCAGAGTTCTGAGATGCTGCAATCTGATGTTGGAATAAATTCACCAATGGAGACAGATGAATGCAGTGCAAACATGTCTAGCTCAGAAGTGAATAGCATGTATCCGAGGGAAGGTTTCGATGGCTTTCCTGTGTATCCTCTTGGATCTCCTGTCCATTCGTTAACTAACATGGTAGGTAGTGGTGAAAATGGTGTTAGCATGCCCACTAGATGGGCTTAA 954 0.4549 MALRTAYLKEHEGIVHNSVGQLSSGTSAPWWNGLGSQPVYGDYCGQNKPFSLEFSNYIDPFSGGKQAVRGAEPVIDRGHATQFSIFPDECKMLGNAQNPQPAVGLQPSLAQPTNNFDIGFNQPTMCAPYPRVDQFCGISAYAPQISGRILLPHNMASNNGPTYVNAKQYHGIIRRRQSRAKAVLENKYIKRRKPYMHESRHLHAMRRPRGNGGRFLNTRKSNNGNGGNDADVNKMGGLQFLSSTSQSSEMLQSDVGINSPMETDECSANMSSSEVNSMYPREGFDGFPVYPLGSPVHSLTNMVGSGENGVSMPTRWA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00216 317 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 95 277 IPR001289 GO:0003700|GO:0006355
Vimu3g00216 317 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 215 IPR001289 GO:0003700|GO:0006355
Vimu3g00216 317 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Vimu3g00216 317 Gene3D - 159 219 - -
Vimu3g00216 317 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Vimu3g00216 317 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Vimu3g00216 317 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00216 Vimu-Chr3 1803337 1806435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00216 22 316 CCAAT-HAP2 Transcription Factor Family AT3G05690 38.462 8.72e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu3g00216 CBFB_NFYA 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00216 K08064 - gmx:100808195 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02244 6 19611576 19615091 Vimu3g00216 3 1803337 1806435 PCT