Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00211 ATGGGCTTTCGTTTACCTGGTATCAGAAAGACTTCGTCTGCCAGAAATGAAGCATCTTCAAAAGTGTTGGATGCGCCAAAGGGATACCTTGCAGTCTATGTGGGAGAGAATATGACACGGTTTGTGATTCCTGTATCACACTTGAACCAACCTCTATTCCAAGAGTTGTTGAGTCAATCTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACAATTCCTTGCAGCGAACATAAGTTACTTTTTCCATTCATGAACGATCCAAGTGATATCCATCTAGGTGAAGCAAGAATGGTGTTAAGAGTCAGTCAAGCGTCTTCAAGAGCAGTGAATGTACCAAAAGGCTACCTTGCGGTGTATGTTGGAGAGAAAATGAAGCGGTTCATGATCCCTCTGTCATACTTGAACCAACCTTCCTTCCAAGACTTGTTGAGTCAAGCTGAAGAGGAGTTTGGATATGAGCACTCAATGGGTGGCCTCACAATTCCTTGCACCGAAGATGTCTTCAACCGTATAACTTCTTGCTTGAATGGATGA 543 0.4383 MGFRLPGIRKTSSARNEASSKVLDAPKGYLAVYVGENMTRFVIPVSHLNQPLFQELLSQSEEEFGYDHPMGGLTIPCSEHKLLFPFMNDPSDIHLGEARMVLRVSQASSRAVNVPKGYLAVYVGEKMKRFMIPLSYLNQPSFQDLLSQAEEEFGYEHSMGGLTIPCTEDVFNRITSCLNG 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00211 180 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 105 178 IPR003676 GO:0009733
Vimu3g00211 180 Pfam Auxin responsive protein 106 178 IPR003676 GO:0009733
Vimu3g00211 180 Pfam Auxin responsive protein 12 80 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00211 Vimu-Chr3 1773616 1776049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00211 24 92 Calmodulin-binding Proteins AT3G43120 51.389 1.04e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00211 - K14488 pcin:129286196 206.838