Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00210 ATGATATTTGGCAAGGCCATCATGGGGTCCAAGGAGGAACAGAGATCACATGATAACTCTGAAGCAGTGGCGACCAACATTGAATGTGTGATGAGACACTATGAGCCACAACTTCTGTGGACGCCAAAGTCTAACAACAAAGCAAAGACTTCGTCTGGCAGAAATCAAGCATCTTCAAAAGTGTTGGATGCGCCAAAGGGATACCTTGCAGTCTATGTGGGAGAGAATATGAAACGGTTTGTGATTCCTGTATCACACTTGAACCAACCTCTATTCCAAGAGTTGTTGAGTCAATCTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACAATTCCTTGCAGCGAACATGTCTTCCAACATATTATTTCTTGTTTGAGTGGACAATAA 396 0.4343 MIFGKAIMGSKEEQRSHDNSEAVATNIECVMRHYEPQLLWTPKSNNKAKTSSGRNQASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQELLSQSEEEFGYDHPMGGLTIPCSEHVFQHIISCLSGQ 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00210 131 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 58 127 IPR003676 GO:0009733
Vimu3g00210 131 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g00210 131 Pfam Auxin responsive protein 49 128 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00210 Vimu-Chr3 1770316 1771320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00210 63 128 Calmodulin-binding Proteins AT3G43120 51.515 1.55e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00210 K14488 - gmx:100820621 131.339