Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00207 ATGAGAACTCTGAATGATATTTGGGAAGGCCATGATGGGGTCCAAGGAGGAACAGAGATCACATGGTATTGTCTTAGAGACCTCATTCATGGATTAATGAGAATGCATGCCATACCCCACATTCTACCTTCTAAGAAAGTGGCAATCCACGTTAAGTTAGATACATCATCAAAGCTGAAAACTATTTCTTATAACTCTGAAACAGTGGCGACAAACATTGAATGCGTGATGAGATACTATGAGCCACAACTTCTGTGGACGCCAAAGTCTAACAACAAAGCAAAGACTTTATCAGCCAGAAATGAAGCATCTTCAAAAGTGTTGGATGCGCCAAAGGGATACCTTGCAGTCTATGTGGGAGAGAATATGAAACGGTTTGTGATTCCTGTATCACACTTGAACCAACCTCTATTCCAAGAGTTGTTGAGTCAATCTGAGGAAGAGTTTGGATATGATCATCCCATGGGTGGCCTCACAATTCCTTGCAGCGAAGATCTCTTCCAACATATAACTTCTTGTTTGAGTGCACAATAA 534 0.412 MRTLNDIWEGHDGVQGGTEITWYCLRDLIHGLMRMHAIPHILPSKKVAIHVKLDTSSKLKTISYNSETVATNIECVMRYYEPQLLWTPKSNNKAKTLSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQELLSQSEEEFGYDHPMGGLTIPCSEDLFQHITSCLSAQ 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00207 177 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 104 174 IPR003676 GO:0009733
Vimu3g00207 177 Pfam Auxin responsive protein 96 174 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00207 Vimu-Chr3 1750713 1751753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00207 109 174 Calmodulin-binding Proteins AT3G43120 51.515 3.67e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00207 K14488 - gmx:100820621 134.035