Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00206 ATGGGTTTCCGCATCCCAGGTATTGTTAGACAGGGATCATTTTCAGCATCCAAAGCAATTCGCAAGGGAGTTGAAGTCCCAAAAGGCTATCTTGCAGTCTATGTTGGAGTTAACATGAGACGGTTTGTGATTCCAATATCATACTTGAACCAACCTTCATTTCAACATTTACTATCCCAAGCTGAAGAAGAATTTGGATATGATCATCCAACGGGTGGCCTCACAATTCCATGCAATGAGGATGAGTTTCTAAACCTCACTTCTCGGTTGAATGAGCTGCTGGCAACTTGTGGCGATGAAAACGACGGAGTTACGGAGGCGCGACACAGACGAAGGTTTTGCCTTCTCTGGTGGTTGGCAGTGTTTGCGAGGCAACTATGTGAGAAGACAACGTCGATGAAGGTCATAGTGGTTGACTCTCGCGTTTGGCTCACGTAA 438 0.4589 MGFRIPGIVRQGSFSASKAIRKGVEVPKGYLAVYVGVNMRRFVIPISYLNQPSFQHLLSQAEEEFGYDHPTGGLTIPCNEDEFLNLTSRLNELLATCGDENDGVTEARHRRRFCLLWWLAVFARQLCEKTTSMKVIVVDSRVWLT 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00206 145 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 20 90 IPR003676 GO:0009733
Vimu3g00206 145 Pfam Auxin responsive protein 21 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00206 Vimu-Chr3 1746894 1750567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00206 25 83 Calmodulin-binding Proteins AT3G43120 57.627 7.51e-19 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00206 - K14488 gmx:100782363 166.392