Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00202 ATGGCTGCTTCTTCCCTTATCTTCAACAGTTCACTCTCCTTTAACTTCTCACACACTGTCATATCCTTCAAACCTCAAAACCTCAAGCCACACTTTTCCATTTCTTATGCGATCTCACTTTGCCATCTTCCCCTGTCTTTGGTTTCCTTCCAAGACACTCAAAACCCCATACAGGATGAAACCCTGCAAAAAACAGAGCTAAATGCCTCACTCTTCAACCTTTCAGCGAGACTCTTTGTGGGAAACTTGCCTTATTCGTTGCCCTCTTCTCAGTTGGGTCAGCGGTTTGGAGAGGCTGGCAATGTTGTATCCGTTGAGATTGTGTGTGATGACATTACGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGATTGTGCAATTCGAATGTTTGATGGCTCTGAAATTGGAGGTAGGATTATTAAGGTAAACATCGCAGAAATACCCAGAAAAGGAAAATGGAGAGTAATGGGTTCAAACTATAGAGGCTTTGTAGACAGCCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTGTGACTTCACAGTGTCTTAGGGATGCCTTTTTTGAGCTGCGAGGCTTCCTGAGTGCCAAAGTCATCTATGAAAGGAACAGTGGGAAGTCTCTGGGATATGGGTTTGTCTCTTTTCGAACTGCTGAGGATGTAGAGGCTGCTTTGAATTCTATGAATGGAGTGGAAGTTCAAGGCAGGCCCTTACGACTGAATCTAGCTGCAGGATAA 762 0.4475 MAASSLIFNSSLSFNFSHTVISFKPQNLKPHFSISYAISLCHLPLSLVSFQDTQNPIQDETLQKTELNASLFNLSARLFVGNLPYSLPSSQLGQRFGEAGNVVSVEIVCDDITDRSRGFAFVTMGSVEEADCAIRMFDGSEIGGRIIKVNIAEIPRKGKWRVMGSNYRGFVDSPHKIYAGNLGWGVTSQCLRDAFFELRGFLSAKVIYERNSGKSLGYGFVSFRTAEDVEAALNSMNGVEVQGRPLRLNLAAG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00202 253 Gene3D - 170 253 IPR012677 -
Vimu3g00202 253 PANTHER OS02G0815200 PROTEIN 58 251 - -
Vimu3g00202 253 Gene3D - 49 169 IPR012677 -
Vimu3g00202 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 148 IPR000504 GO:0003723
Vimu3g00202 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 247 IPR000504 GO:0003723
Vimu3g00202 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Vimu3g00202 253 SUPERFAMILY RNA-binding domain, RBD 76 250 IPR035979 GO:0003676
Vimu3g00202 253 SMART rrm1_1 176 249 IPR000504 GO:0003723
Vimu3g00202 253 SMART rrm1_1 77 150 IPR000504 GO:0003723
Vimu3g00202 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 253 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00202 Vimu-Chr3 1730553 1732667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00202 78 251 Eukaryotic Initiation Factors Gene Family AT1G49760 31.217 1.63e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00202 - - vra:106769956 464.536