Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00201 ATGAACGACTTGTTCTCCGGCTCCTTCACCCGCAACAGCGACCAAGCCTCGCCGGACCACCACCACCACGTGGTCGAGATGGCGGCGGTGGAGGGCGGCGTGAACCTGGAGAAATTCTTTGAGGAGGTTGAGCCGGTAAAAGCAGAGTTGAAAGAGCTAGAGCGTCTCCATGAGAATTTACGTGGTTCCCACGAAAAAAGCAAGACCCTTCACAGTGCTAATGCTGTGAAAGAGCTTCGCTCGCGCATGGACGCTGATGTAGCACTGGCTTTAAAGAAAGCCAAGCTCATCAAGGTCCGGCTCGAAGCTCTGGATCGGTCTAATCAGACAAGCCTAAACCTGCCTGGTTCTGGACCGGGTTCTTCCTCCGACCGGACTAGAACATCTGTGGTGAACGGATTGAGGAAGAATCTGAAGGACTCCATGGACAACTTCAATAGCCTTAGGCAACAGATATCGACGGAGTACAGGGAAACCGTGCAGCGGAGATATTATACAGTTACCGGAGAGAACCCTGATGACAAAACCATCGACCTTCTCATTTCTACTGGTGAGAGTGAAACATTTTTGCAGAAAGCGATTCAGCAGCAAGGTAGAGCGAGTGTGATGGATACGATCCAAGAGATTCAAGAGAGACACGACACAGTGAAAGAGATAGAGCGAAACCTGAAGGAGCTGCACCAGTCCCAGGGAGAGCAATTGGACGACATCGAGAGCCATGTAGCACGTGCCAACTCGTACGTGCGAGGTGGGGTCCAGCAGCTCCAAGTAGCAAGGAAGCACCAGAAAAACACGCGAAAGTGGACCTGCTACGCCATCATTTTGCTCATCATTATCATTTTGATCATAAAGGCAGGAAGAGGAACTCGCAGGAGCAGTTTTATGGTGGTGGTATATTCTTTTGCAGATATCTATATGCATGTATATATTACCTTGTTATCTGAAAATTTAGGTAGCTTTATGAGTGAAGTAGTACTGTAG 981 0.4913 MNDLFSGSFTRNSDQASPDHHHHVVEMAAVEGGVNLEKFFEEVEPVKAELKELERLHENLRGSHEKSKTLHSANAVKELRSRMDADVALALKKAKLIKVRLEALDRSNQTSLNLPGSGPGSSSDRTRTSVVNGLRKNLKDSMDNFNSLRQQISTEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLKELHQSQGEQLDDIESHVARANSYVRGGVQQLQVARKHQKNTRKWTCYAIILLIIIILIIKAGRGTRRSSFMVVVYSFADIYMHVYITLLSENLGSFMSEVVL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00201 326 CDD SNARE_syntaxin1-like 205 256 - -
Vimu3g00201 326 Pfam SNARE domain 232 283 IPR000727 -
Vimu3g00201 326 SMART tSNARE_6 201 258 IPR000727 -
Vimu3g00201 326 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g00201 326 CDD SynN 36 193 IPR006011 GO:0016020
Vimu3g00201 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 258 IPR000727 -
Vimu3g00201 326 Coils Coil 36 56 - -
Vimu3g00201 326 FunFam Syntaxin 132 199 286 - -
Vimu3g00201 326 Pfam Syntaxin 38 228 IPR006011 GO:0016020
Vimu3g00201 326 Coils Coil 131 151 - -
Vimu3g00201 326 SUPERFAMILY t-snare proteins 34 251 IPR010989 GO:0016020|GO:0016192
Vimu3g00201 326 Gene3D - 34 166 - -
Vimu3g00201 326 SMART SynN_4 31 157 IPR006011 GO:0016020
Vimu3g00201 326 Gene3D - 195 285 - -
Vimu3g00201 326 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Vimu3g00201 326 Coils Coil 209 229 - -
Vimu3g00201 326 PANTHER SYNTAXIN 52 279 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00201 Vimu-Chr3 1721286 1722863 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00201 28 270 SNARE and Associated Proteins AT3G11820 70.751 4.15e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00201 K08486 - gmx:100793347 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00201 3 1721286 1722863 Vimu3g00201 3 1721286 1722863 ECH
Vimu6g02248 6 19631738 19632292 Vimu3g00201 3 1721286 1722863 PCT