Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00200 ATGGATTTGTATGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGCAGGGGTAGGATTCTAGACACCATCAATGAGATTCAAGAGAGACATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCACCAAGTATTCCTTGACATGACAGTATTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCAATCGTTTGTGCACACTGGAACTGAGCATTTGCAGACTGCACGAAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTGCTCTTCACTCTGAGACCATGGGAAAATAGCAGTAGTGGCGGCAATGGTGGTAATCAGTCTCCACAAGTCCAAACACCACCTTCGCCTCCACCTCCTGCTTAG 447 0.4609 MDLYGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAQSFVHTGTEHLQTARKHQKNTRKWTCYCIILLLVIILVVVLFTLRPWENSSSGGNGGNQSPQVQTPPSPPPPA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00200 148 CDD SNARE_syntaxin1-like 26 88 - -
Vimu3g00200 148 MobiDBLite consensus disorder prediction 125 148 - -
Vimu3g00200 148 PANTHER SYNTAXIN 19 110 IPR045242 -
Vimu3g00200 148 FunFam Syntaxin 132 20 120 - -
Vimu3g00200 148 Coils Coil 27 47 - -
Vimu3g00200 148 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 27 89 IPR000727 -
Vimu3g00200 148 Pfam SNARE domain 63 115 IPR000727 -
Vimu3g00200 148 Pfam Syntaxin 5 62 IPR006011 GO:0016020
Vimu3g00200 148 SMART tSNARE_6 22 89 IPR000727 -
Vimu3g00200 148 SUPERFAMILY SNARE fusion complex 24 94 - -
Vimu3g00200 148 ProSitePatterns Syntaxin / epimorphin family signature. 33 72 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu3g00200 148 Gene3D - 22 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00200 Vimu-Chr3 1718355 1719761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00200 5 145 SNARE and Associated Proteins AT3G11820 70.270 3.77e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00200 K08486 - gmx:100809258 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02249 6 19638141 19639058 Vimu3g00200 3 1718355 1719761 PCT