Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00198 ATGAACGACTTGATCTCCGGTTCCTTCTCTCGCTTCCGCGGAGACCAGGCCTCCCCGGACCGCCACCACGTCATCGAGATGTCTGGCGCCGGTGACGGGCACGCCGGCGGGAAAGTGAACCTCGACAAGTTCTTTGAGGACGTGGAGGGGGTGAAGGAGGAGTTGAAGGAGTTGGAGGGACTGGCGCAGAGTCTGAGGAGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCCAACGCCATCAGGGACCTCCGTTCGCGCATGGACGGTGACGTTTCGGTGGCTCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCTCTCGACCGCTCCAACGCCGCCAACCGGAACCTGCCAGGCTGCGGACCTGGTTCCTCCTCGGACCGAACCCGGACCTCCGTGGTCAACGGGCTGAAGAAGAAGCTGAGGGACTCCATGGAGAACTTCAACGAGATTCGGCAGCTCGTGTCGTCGGAGTACCGGGAGACTGTGCAGCGCCGCTACTTCACCGTCACCGGCGAGAATCCCGATGATAACACGCTCGATCTCTTGATCTCCACTGGTAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGATTTATCTGTTTGTTATCGTTACTGAGTAA 633 0.5687 MNDLISGSFSRFRGDQASPDRHHVIEMSGAGDGHAGGKVNLDKFFEDVEGVKEELKELEGLAQSLRSSHEQSKTLHNANAIRDLRSRMDGDVSVALKKAKLIKLKLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLRDSMENFNEIRQLVSSEYRETVQRRYFTVTGENPDDNTLDLLISTGKVFFFFFFFFFQIYLFVIVTE 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00198 210 CDD SynN 41 189 IPR006011 GO:0016020
Vimu3g00198 210 Gene3D - 39 171 - -
Vimu3g00198 210 Pfam Syntaxin 43 194 IPR006011 GO:0016020
Vimu3g00198 210 SMART SynN_4 36 162 IPR006011 GO:0016020
Vimu3g00198 210 Coils Coil 41 68 - -
Vimu3g00198 210 SUPERFAMILY t-snare proteins 40 195 IPR010989 GO:0016020|GO:0016192
Vimu3g00198 210 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00198 Vimu-Chr3 1717371 1718003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00198 33 195 SNARE and Associated Proteins AT3G11820 77.301 5.01e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00198 K08486 - gmx:100809258 304.293