Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00193 ATGGACGAAATCGACGTGCCTCCCTTCTTCCTCTGTCCGATCTCCCTCGAGCTCATGAAAGACCCCGTCACAGTCTCCACCGGAATCACCTACGACCGCCACAGCATCGAGAAATGGCTCTTCGCCTCCAACAACGACACGTGTCCCGTCACCAAGCAGCCTCTCCTCCCAGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGTCCTGGTGCACCGTCAACGCCTCCCATGGCATCCAACGAATCCCAACGCCCAAGCCCCCCGTCGACAAAACCATCATCCAAAACCTTCTCAACGACGCTTCCGGCTCCCCCAACCTCCAGCTTCAGTGCCTCCGAACCCTAAAATCCATCGCTTCCGAGTCCCAAACCAACAAACGCTCCATCGAATCCGCAGGCGCTGTTAAATTCCTAGCTTCGGTTATAACAAACACTGTAAACTCTTGTTTAGACGATGACGTGGAGCTGGAGTTGAAAGCAAGCGTTGCGGATGAAGCATTGAGCTTGTTACACAACCTTCACTTGTCCGAACCGGGTTTGAAGACTCTACTGAGTCACCCCGAGTTTCTAAACTCGTTAACCAAGGTTATGCAGCGAGGAATCTACGAGTCACGCGCTTACGCTGTTTTTCTACTGAGGTCGTTGTCGGAAGTGGCGGAACCGGTGCAGTTAAATAACCTGAAACCGGAACTGTTTGTCGAACTGGTTCAAGTCCTGAAGGACCAGATTTCGCAGAAGGGTTCCAAGGCCACACTTCAGACGATGATTCAGGTGTGTCCGTGGGGAAGGAACAGGGTGAAAGCGGTTGAGGCCGGGGCCGTGCCGGTTATCGTGGAGCTTCTTCTTGAATACAGGGAGAGGAAGCCCTGCGAGATGATGCTTGTTGTGTTGGAGATTCTGTGTCAGAGCGCGGACGGGCGCGCGGAGTTGCTGGCGCACGCGGCGGGAGTGGCGATCGTGGCGAAGAAGATTCTGAGGGTGTCGACGATGGCGAACGACAGGGCGACGAAGATTCTGTTGGCCGTGTGTAGATTCTCGGCGACGCCCAGCGTGTTGCAGGACATGATGCAGCTGGGGGTGGTTGCGAAACTGTGCTTGGTGCTGCAGGTGGATAGTGGGAACAAGGCGAAGGAAAAAGCCAAGGAGATTCTCAAACTGCACGCCAAAGCGTGGAAGAACTCGCCTTGCATACCTGTACACTTGCTTGCTTCCTATCCAACCAGTGCATGA 1236 0.5485 MDEIDVPPFFLCPISLELMKDPVTVSTGITYDRHSIEKWLFASNNDTCPVTKQPLLPDLTPNHTLRRLIQSWCTVNASHGIQRIPTPKPPVDKTIIQNLLNDASGSPNLQLQCLRTLKSIASESQTNKRSIESAGAVKFLASVITNTVNSCLDDDVELELKASVADEALSLLHNLHLSEPGLKTLLSHPEFLNSLTKVMQRGIYESRAYAVFLLRSLSEVAEPVQLNNLKPELFVELVQVLKDQISQKGSKATLQTMIQVCPWGRNRVKAVEAGAVPVIVELLLEYRERKPCEMMLVVLEILCQSADGRAELLAHAAGVAIVAKKILRVSTMANDRATKILLAVCRFSATPSVLQDMMQLGVVAKLCLVLQVDSGNKAKEKAKEILKLHAKAWKNSPCIPVHLLASYPTSA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00193 411 Gene3D - 93 400 IPR011989 -
Vimu3g00193 411 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Vimu3g00193 411 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Vimu3g00193 411 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Vimu3g00193 411 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Vimu3g00193 411 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Vimu3g00193 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Vimu3g00193 411 CDD RING-Ubox_PUB 7 55 IPR045210 -
Vimu3g00193 411 SUPERFAMILY RING/U-box 3 80 - -
Vimu3g00193 411 SUPERFAMILY ARM repeat 96 376 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00193 Vimu-Chr3 1641429 1642664 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00193 2 408 U-box Gene Family AT2G35930 57.005 2.96e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00193 - - gmx:100795263 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00193 3 1641429 1642664 Vimu3g00193 3 1641429 1642664 ECH