Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00192 ATGGAGATGATACTGATTGGCCCTTCTGATTGGGAAGATCATTCCAAAGGAAAGGAAGGTTACGTAAGATGCAGGATTCATAACCTCCCCCAAGAATCGAATCCAGGGGTGTACGAGCTTGGAATTGATGTATTCAATGGTGGTTTGGGGCGTGAAATTTCCAAGCTTACCCCTCATTCTCACCGCATAGTGGTGGTTTACCTTGGACAAGCTGACAATGTGAGAACAAGACTTCAGCGTTATGGCAGAACATGTGATCATATGTGGAGTGGCTGTTGGAATGGTTCTTCTTCCCAAAAGGGGCGCCCCTTGTTTGAGGAAGTGTTTTCACAAGGATTCTCAATCGTTTATAAATGGGCTCCTGTAACAGATGCAAAACAAAGAAGATGCCCTATGAACAGAAGCAACGAGAGAAGACCAAACGTGGAGGAAAGGAGAAGGAAGAGAGCTTGA 453 0.4525 MEMILIGPSDWEDHSKGKEGYVRCRIHNLPQESNPGVYELGIDVFNGGLGREISKLTPHSHRIVVVYLGQADNVRTRLQRYGRTCDHMWSGCWNGSSSQKGRPLFEEVFSQGFSIVYKWAPVTDAKQRRCPMNRSNERRPNVEERRRKRA 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00192 150 Pfam GIY-YIG domain-containing protein 4 127 - -
Vimu3g00192 150 MobiDBLite consensus disorder prediction 130 144 - -
Vimu3g00192 150 MobiDBLite consensus disorder prediction 128 150 - -
Vimu3g00192 150 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 4 126 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00192 Vimu-Chr3 1638305 1638991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00192 4 122 HRT Transcription Factor Family AT5G56780 45.669 1.73e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00192 - - vra:106762033 228.794