Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00190 ATGGAGGAAATTGAAGTGCCTCAATACTTCATCTGCCCCATATCCCTCCAAATCATGAGGGACCCCGTTACGGCCATTACGGGCATAACTTACGACCGAGAAAGCATTGAACAATGGCTATTCAATAACAACAACACCACCTGCCCCGTTTCCAAACAACTCCTCCCAACAGATTCTGATCTAACCCCTAACCATACCCTTCGACGCTTGATCCAAGCCTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGCATTCCAACTCCTAAACCTCCTCTCAACACACTTCAAGTCCTTAAACTCCTCAAACATCTCCATCATCATAAAACCTTCGTCCAGTTGGAACTCCTTGCCCTCGACAACCACAGAAACAAAAAGTGCTTGCTTGAAGCAGAGGTCCCAAGAGCCATGATCATCTTCATCATCAATTGCTATACAATAAATCATATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAGTTTCTCAAGATCCCCAAGAAGGATTGGCCGCTGCTCGTGAAGGACCACGACCAGATAATGGATTCTCTAACATGGATTCTGTGTCGTGAGGGAATGGAGAACTCCGTTGCAGTGAAGTCCCATGCGCTTCTACTTCTGAAGAAGATCATCAACAAGGGCGACACGTGTCACGTTCTGGAGAGACTGAAACCCGAATTCTTCGAAACAATGGTGAGGATTCTGAGACACGGAGTGACCCAACAAGGAATGAGTGCGGCACTTCACGTTCTGCTAAGCGCTTCTTCTTCGACGCGGAACAGGATCATGATGGTGGAAGCAGGTGTGGTTCAGGAAGTGGTGGAGATCGAAATGGGGGCGCCGGAGAAGAGAGTGACGGAACTGACGCTGGCTATATTGTTCCACTTGTGTTGTTGCGCCAACGGGAGAGCTAAGTTTTTGAGCCACGAAGGGGCCATCGCGGTGGTGACGGAGAGGATTCTGAAGGTGTCTGCGGCGGTGGACGATAGGGCGGTGTTTGTTTTGGCGATGGTGGCTAAGTTTTCGGGGACGAAGGTGGTTTTGCAGGAGATGTTGAAGGTGGGAAGCATGGCGAAGCTTTGCATGGTGCTTCAGGCTGATAGGGCAAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACACTCGGAGGTTTGGAGCGACTCGCCTTGCTTTCCTCGTTCGTCGTTTTGTGCCTACGTTCCCTACTGA 1218 0.4951 MEEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFNNNNTTCPVSKQLLPTDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNTLQVLKLLKHLHHHKTFVQLELLALDNHRNKKCLLEAEVPRAMIIFIINCYTINHIQKGLQEALSILQFLKIPKKDWPLLVKDHDQIMDSLTWILCREGMENSVAVKSHALLLLKKIINKGDTCHVLERLKPEFFETMVRILRHGVTQQGMSAALHVLLSASSSTRNRIMMVEAGVVQEVVEIEMGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKVGSMAKLCMVLQADRAKYLKDKAMEILKEHSEVWSDSPCFPRSSFCAYVPY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00190 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vimu3g00190 405 CDD RING-Ubox_PUB 7 61 IPR045210 -
Vimu3g00190 405 PANTHER WDSAM1 PROTEIN 2 395 IPR045185 GO:0061630
Vimu3g00190 405 SUPERFAMILY ARM repeat 114 371 IPR016024 -
Vimu3g00190 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vimu3g00190 405 SUPERFAMILY RING/U-box 3 79 - -
Vimu3g00190 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Vimu3g00190 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vimu3g00190 405 Gene3D - 94 387 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00190 Vimu-Chr3 1613184 1614703 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00190 2 394 U-box Gene Family AT3G11840 41.497 2.27e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00190 - - gmx:100798446 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00190 3 1613184 1614703 Vimu3g00190 3 1613184 1614703 ECH