Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00189 ATGGCGACATATTTTCAAAGTAACCCCAAAATTCAAGCAGGTGCTGACGGCCTTCAAACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCAGCCGCCATCCCACGGCGGAAACCACTTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACTCCTCCCTACTGAATCTCCCTCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCACTCTCGGCAGCAACGCAGGAGCCGCCACCGTCCATGCCCCATGACGTCTCCGCCCTGCATGGCTTCCTTCCACGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACGGCGCGTGACGCCACACGCGCTTCCCAGGGACTGTCACTTAGCCTTCACGGTGAGGAGGTGCGCCCAAGGTCATCCTCCGCCTCCGGGGCCTCCAACGGCGGCGGTATGGCGGGGATTCAGAGTGTTCTCTTGAGTTCCAAGTTCTTGAGGGTCACGCAAGAACTTCTGGACGAGGTTGTGAATGTTAACAGCGTAATTAAGGTTGAACAAGGGAAGCTGAGCTTCGAGAAAACTAAGGCGGTTGGAGAATCATCAACCGCTGCTAGTGGTGACGGCGGAGAGGGAAGTGGGAAACGTAGCTCTGAACTGTCTACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGACGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACATCCTCCTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACGTACACTGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGGGCCAAAGTTGAAGGTTCTAGGCTCAAATACGTGGACCATCATCTACGCCAACAGAGAGCTATTCAACAGTTGGGTATGATGCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACCCGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAACACGAACTAAATGGAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCCGCGATGAAACGAGAGAAACGTCCTACCTCTGAGATTGAATCAAAAGGTTCTAGTTCTAAACAAGATGTTTCTAATTCAATAGTTTCAACTTCACCATCAACATCACCACCTGTAGTGGGTAATGTGAAGAATCAATCAGGATTCAGTTTCATGGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCGAAGAAGGGAAGGAACCATGAAATCCTACTCTCTCCAAATCGTGCTTCTTCAATGAGCATGGATGTTAAAAGCAATGAAGGCAACAATGAGCAACAGCTTTCAATGGAGGAGAGACAGAGCAGAGATGGGTACTCTTTCATGGGGAGCCAAACAAACTTCACAAGTGGTTTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAACAATTCACACCAAGGTTTTCAGGTAATGGCGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACATTGTCAGGAACACATCAAACCTTTCTCCCAAACCAGAACATTCAACTAGGAAGAGGGTTGGACATTGGTCAACCGAATCAGTTTGGTGTCTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGGTACTGGACTTTGTGGCATAA 1950 0.4831 MATYFQSNPKIQAGADGLQTLVLMNPDYVQYSDAQPPSHGGNHLFLNSAATVANNSSLLNLPHAPSPHTQQFVGVPLSAATQEPPPSMPHDVSALHGFLPRMQYNLWNTIDPSTARDATRASQGLSLSLHGEEVRPRSSSASGASNGGGMAGIQSVLLSSKFLRVTQELLDEVVNVNSVIKVEQGKLSFEKTKAVGESSTAASGDGGEGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKVEGSRLKYVDHHLRQQRAIQQLGMMHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGNGSEEKSSKSGEDPAMKREKRPTSEIESKGSSSKQDVSNSIVSTSPSTSPPVVGNVKNQSGFSFMGSSELDGITQGSPKKGRNHEILLSPNRASSMSMDVKSNEGNNEQQLSMEERQSRDGYSFMGSQTNFTSGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAFESINMQNPKRFAAQLVLDFVA 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00189 649 CDD homeodomain 338 399 IPR001356 GO:0003677
Vimu3g00189 649 ProSiteProfiles 'Homeobox' domain profile. 335 398 IPR001356 GO:0003677
Vimu3g00189 649 FunFam BEL1-like homeodomain protein 9 341 403 - -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 128 148 - -
Vimu3g00189 649 SMART prehox3 151 290 IPR006563 -
Vimu3g00189 649 Pfam Homeobox KN domain 355 394 IPR008422 GO:0003677|GO:0006355
Vimu3g00189 649 Gene3D - 333 411 - -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 410 475 - -
Vimu3g00189 649 SMART HOX_1 338 402 IPR001356 GO:0003677
Vimu3g00189 649 Coils Coil 222 249 - -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 410 442 - -
Vimu3g00189 649 SUPERFAMILY Homeodomain-like 339 405 IPR009057 -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 504 533 - -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 443 475 - -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 193 222 - -
Vimu3g00189 649 Pfam Associated with HOX 156 289 IPR006563 -
Vimu3g00189 649 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 424 - -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 133 148 - -
Vimu3g00189 649 MobiDBLite consensus disorder prediction 504 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00189 Vimu-Chr3 1603417 1605784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00189 1 649 Homeobox Transcription Factor Family AT2G35940 48.977 3.62e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu3g00189 POX 2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00189 - - gmx:100810851 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00189 3 1603417 1605784 Vimu3g00189 3 1603417 1605784 ECH
Vimu6g02255 6 19695050 19698242 Vimu3g00189 3 1603417 1605784 PCT