Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00173 ATGGCTGATACACAACCGCCGCCGAACACCACCGCAGCAAACGACGCCGCTTCCGTTCCTTCAAAGGAGCGTCTCCGCACAAGATGCTGCTATTGTCTCTGCAAAACCTTGTGGATCTTTCTGGTTCTCGTTATCGTCCTCGTCATGCTCGTGATTTTGGTTTTATACATCATCATCACACCCCGCTCCTTCAGATTCCACGTCACTGACGCTAGCCTCACGCAATTCGATTACGCTGCCAACTCCACCCTTCGCTACAACCTCGTACTCAACATCACAGCAAGCAACCCTAACAAGAGGCTCAAGATCTACTACGACGTCGTTCGGGCCAACGCGTTCTACGGCGGCGTTAGGTTTTCCACCACGGACGTCAACATGCCCTGGAATTCCTACCTTCAGGACAAGAAGGGCACCAACCTTTTCAGTGCGGTTTTCTCGGGACAACGTGTGGTGGTGTTGGATAGGGACGAGGTTTCTGAGTTTGATGAAGGTATCAAGAATAGGGTGTTCCCTATAGATGTTATGATTGGTTTCACCATTAGGTTCAGGCTTGAAGCTTTTCAGTTTGGGTATTACTATCCCAGAGGCATGTGCAAACTCAAAGTTCCTTTGACTTCTAAGGGGGACGAGGTGGCTCCGTTTAAGGCCACCAAGTGTCGAATTGATTTCTGA 672 0.4985 MADTQPPPNTTAANDAASVPSKERLRTRCCYCLCKTLWIFLVLVIVLVMLVILVLYIIITPRSFRFHVTDASLTQFDYAANSTLRYNLVLNITASNPNKRLKIYYDVVRANAFYGGVRFSTTDVNMPWNSYLQDKKGTNLFSAVFSGQRVVVLDRDEVSEFDEGIKNRVFPIDVMIGFTIRFRLEAFQFGYYYPRGMCKLKVPLTSKGDEVAPFKATKCRIDF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00173 223 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 5 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00173 Vimu-Chr3 1480959 1481630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00173 58 205 SNARE and Associated Proteins AT1G32270 32.667 1.28e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00173 - - gmx:100787531 276.944