Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00170 ATGGCCGAAACACAACCTCAACCGAACATCCCCGCAACCAACGACGTCGTGTCGGCTCCTACAAAGGAGCACCTCGGAACAAGATGCGGCTATTGTCTCTGCAAAACCTTCTGGATTTTTCTGGTCCTCGTTATCATTCTCGTTATGCTTGTGATTTTGGTCTTATACATCATCATCACACCCCGCTCCTTCAGATTCCACGTCACCGACGCCAAGCTCACGCAATTCGACTACGCCGCCAACACCACCACCCTCAGCTACAATCTCATACTCAACATCACAGCAAGCAACCCTAACAAGAAGCTCAAGATCTACTACGACGTCGTTCGGGCCAACGCGCTCTACGGCGGCGTTAGGTTTTCCACCACCGACGTCAACATGCCATGGAATTCCTACCTTCAGGACAAGAAGAGCACCAACCTTTTCAGCGCGGTTTTCTCGGGACAACATGTCATGGTGTTTGATCGAAACCAGGTTTCTAACTTCCATGAAGATAGCAATGATAGGGTGTTCCCTATTGATATAAAAATCAAGTTTCGTATCAGGTTGAGGCTTGGGGATTATATTTCTGGGAACTTCAATGCCAGAGCCGCGTGCGAGCTCAACGTTCCTTTCACTGATTCCAATGGGAAAACGGTGGCTGCGACTGCGTTTGAGTCCACCAAGTGCAAAGTCGATTTCTGA 684 0.4912 MAETQPQPNIPATNDVVSAPTKEHLGTRCGYCLCKTFWIFLVLVIILVMLVILVLYIIITPRSFRFHVTDAKLTQFDYAANTTTLSYNLILNITASNPNKKLKIYYDVVRANALYGGVRFSTTDVNMPWNSYLQDKKSTNLFSAVFSGQHVMVFDRNQVSNFHEDSNDRVFPIDIKIKFRIRLRLGDYISGNFNARAACELNVPFTDSNGKTVAATAFESTKCKVDF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00170 227 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 19 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00170 Vimu-Chr3 1477920 1478603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00170 58 206 SNARE and Associated Proteins AT1G32270 28.188 1.59e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00170 - - ccaj:109813660 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02288 6 20012494 20013174 Vimu3g00170 3 1477920 1478603 PCT