Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00168 ATGTCGCAACTGAACGGCGCTTACTACGGTCCCTCCATTCCGCCGCCGAAGTCCTACCGCCGTCCGTCCAGCGGCGGAGGTGGGTGCGGGTGCCTGAGCTGCTGCTGTGGGTGCATCTTCAACTGCATCATCAGCCTCATCTGCAAGATCCTCACCACCGTGCTCATCATCGCCGCCGTGCTCGTGTTCCTCTTCTGGCTCATCGTGCGCCCCAATGTCCTCAAATTCCACGTCAGCGATGCCTCTCTCACGCGCTTCACGTTCTCCAACAACACGCTCCACTACAACCTCGCCCTCAACGTCTCCATCCGCAACCCTAACCGCAGAGTCGGCGTCTACTACGACCAAATCGAAGCGCTCGCTTTATACGATGATGTTCGATTCGCCTCCCAGACCCTGGGGCCCTTCTTCCAGCACACCAAAAACACCACCTTCATCAACCCCCTTTTTAACGGCCAGCGCGTGACGCCACTCACCGCTGAGCAAGGTTCCCATTTCGAAAAGGAGAACGGCGCCGGGATTTTCTCCATCGACTTGAACCTATTCATGAATGTTAGATTCAAGTTCTTGTTCTTCAAAAGCCACACCGTCAGACCCAAGATTCGGTGTGGGTTGCACGTGCCGCTGAAATCGCGTAACGGAACTACCTCTCCTGACGCTACGTTTCAGGCCACGGACTGCGATTGGATTTACAAACGATGGTGGATCCGTTGA 714 0.5588 MSQLNGAYYGPSIPPPKSYRRPSSGGGGCGCLSCCCGCIFNCIISLICKILTTVLIIAAVLVFLFWLIVRPNVLKFHVSDASLTRFTFSNNTLHYNLALNVSIRNPNRRVGVYYDQIEALALYDDVRFASQTLGPFFQHTKNTTFINPLFNGQRVTPLTAEQGSHFEKENGAGIFSIDLNLFMNVRFKFLFFKSHTVRPKIRCGLHVPLKSRNGTTSPDATFQATDCDWIYKRWWIR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00168 237 Pfam Late embryogenesis abundant protein 100 203 IPR004864 -
Vimu3g00168 237 PANTHER OS05G0367900 PROTEIN 45 212 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00168 Vimu-Chr3 1450151 1450864 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00168 68 209 SNARE and Associated Proteins AT1G32270 37.762 1.66e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00168 - - pvu:PHAVU_007G268900g 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00168 3 1450151 1450864 Vimu3g00168 3 1450151 1450864 ECH
Vimu6g02289 6 20020697 20021377 Vimu3g00168 3 1450151 1450864 PCT