Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00160 ATGCAGTTCCCTCCACATCTATCCGAAACCAAATTCCCTCCTTCCCTCGTTTTCTGCTATCGCCTCCTCTACGCTCCTAACTCCCTCTTTTCCTTCCAAACCCTTTTCCCTACTCTTTCTCTCTCTAAACCTCCTCACTTTCTCTCTCTAAAACCCTACTTTCCGCCCATCATCGCCCTTTTCCCTCCAAATTCCCCCCAATTTCGCTCCGCCCCTCGCCCCATGTCCACCGCCGCCGGACCTCCCGACCGCCGTGCCTCGCCGCCGCGGGGGGCTGCCGGCACCACTGTCCGCCCCGCCCTCAAGCGTCACCTCGCTTTCGTCACTAAACCGCCCTTTGCTCCCCCAGACGACTACCACAGCTTCTCCTCCATCGACTCCCGCCGCCTTGCCGATGAAGCCGTTGTCGTTAGATCTCCAGTGAGTACATCGGTTTCCTCTCTCCGGTCTCAAATTCACCTCCGCGGCTCTCGAATCTGGAATTACATGAAGCGAAAGGGTGGAATGAATGACAGCGAAGGAGAGTCTCACACACAGAAGTGGAGTAACAGTCCTGGATACACTAATGTTAGTAACATAACGAATAGTCCCTTTAAAACTCCAGTGTCTGCAAAAGGAGGAAGGACACAGAAGGCAAAGGCTTCCAAAGACGGCAGATCATGTCCTCACACACCCATCTCAAATGCTGGTTCCCCGTCTCCTCTTACTCCTGCCAGCAGCTGCCGTTATGACAGTTCCTTAGGTCTCTTAACCAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGATCTAAATAAAGCAGCCGAGACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACGAATGTTTTAGAAGGCATTGGTCTCATTGAAAAGAAACTCAAAAATAGAATACATTGGAAGGGAATTGAATCTTCCACGTCTGGTGAGGTGGATGGCGATATATCCGTGCTTAAGGAAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGATTGAGAAAGCTGAGTGAAAATGAAAATAACCGGAAGTGCCTTTTCGTGACCGAGGATGACATTAAGAACCTACCTTGCTTCCAGGTTTTCCTTTTATTAATACTGCCGTATTCCTGCAAGCAGAATGAAACTTTAATAGCAATTAAAGCTCCGCATGGAACTACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCTCAGAGGAGATATAGAATCATTCTCAGAAGCACAATGGGTCCCATTGATGTCTACCTCATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAACGGTGCTGAGCTGCCCATGATCCCACTTGCTTCCAGTTCTGAGTCCAACGAACAAGTAATGACAGAAATGGTTCCTGCCGAATGCAGCGGAAAAGAATTTGAACCTCAAACTCAGCTGTCTTCTCATGTATACTCCGATATAAATGCTTCGCAAGAGTTTGCTGGTGGCATGATGAAGATCGTCCCTTCAGATGTCGATAATGACGCTGATTATTGGCTTCTATCAGATGCTGACGTTAGTATAACAGATATGTGGAGAACAGATTCTACTGTTGATTGGAATGGGGTGGACATGCTTAATCCTGATTTTGGAATCATTTCGAGACCTCAAACTCCATCATCGGGGTTTGTGGAAGTGCCAACACCAGGAGCAAATTCTAATCATAAGTGA 1728 0.4699 MQFPPHLSETKFPPSLVFCYRLLYAPNSLFSFQTLFPTLSLSKPPHFLSLKPYFPPIIALFPPNSPQFRSAPRPMSTAAGPPDRRASPPRGAAGTTVRPALKRHLAFVTKPPFAPPDDYHSFSSIDSRRLADEAVVVRSPVSTSVSSLRSQIHLRGSRIWNYMKRKGGMNDSEGESHTQKWSNSPGYTNVSNITNSPFKTPVSAKGGRTQKAKASKDGRSCPHTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKEEVEKLSLEEQGLDDQIREMQERLRKLSENENNRKCLFVTEDDIKNLPCFQVFLLLILPYSCKQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAELPMIPLASSSESNEQVMTEMVPAECSGKEFEPQTQLSSHVYSDINASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGVDMLNPDFGIISRPQTPSSGFVEVPTPGANSNHK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00160 575 Pfam E2F transcription factor CC-MB domain 323 436 IPR032198 GO:0046983
Vimu3g00160 575 MobiDBLite consensus disorder prediction 168 237 - -
Vimu3g00160 575 Gene3D - 236 309 IPR036388 -
Vimu3g00160 575 SMART E2F_TDP_2 242 307 IPR003316 GO:0005667|GO:0006355
Vimu3g00160 575 MobiDBLite consensus disorder prediction 68 96 - -
Vimu3g00160 575 MobiDBLite consensus disorder prediction 221 237 - -
Vimu3g00160 575 MobiDBLite consensus disorder prediction 174 203 - -
Vimu3g00160 575 Pfam E2F/DP family winged-helix DNA-binding domain 244 307 IPR003316 GO:0005667|GO:0006355
Vimu3g00160 575 Coils Coil 320 357 - -
Vimu3g00160 575 PANTHER TRANSCRIPTION FACTOR E2F 176 537 IPR015633 GO:0000978|GO:0006357
Vimu3g00160 575 SUPERFAMILY "Winged helix" DNA-binding domain 242 305 IPR036390 -
Vimu3g00160 575 MobiDBLite consensus disorder prediction 555 575 - -
Vimu3g00160 575 Gene3D - 314 437 - -
Vimu3g00160 575 CDD E2F_DD 320 437 IPR032198 GO:0046983
Vimu3g00160 575 FunFam E2F transcription factor 1 236 309 - -
Vimu3g00160 575 SUPERFAMILY E2F-DP heterodimerization region 320 437 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00160 Vimu-Chr3 1318576 1323137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00160 95 565 E2F-DP Transcription Factor Family AT2G36010 52.495 1.26e-147 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vimu3g00160 E2F_CC-MB 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00160 K06620 - gmx:100811762 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00160 3 1318576 1323137 Vimu3g00160 3 1318576 1323137 ECH