Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00156 ATGTCAAGTTCAGCAAGAAAACTAACCTTTAACACTGTCTCCGTCAGCTTGGGCTGCGGCACCTGCAGAAGGCCCAAGCTTCTCCGTCACATATTCCACCCCAAACGTCGTCCCAAGAGGCCCACCTTCCGAGCCCAAACCCATCACTGGTCGCAAGACAGAGACGACACTACTACCACCGCCACCAGTACTACAACCACCACCACCACCTTCTCTCCGTGCCATGTCGACTCTTCCACGCAGTTCTGCGACTACGCCAAGAGCGTGCGGGGCTTCGGCCGTGTGGGGAGCGAGGGCGTGGCGGTGGAAAAAGACTCCGACGACCCTTACCTGGACTTCCGACACTCCATGCTCCAGATGATACTCCAAAACGAGATTTACTCCAAAGACGATCTCAGAGAACTTCTCAACTGTTTCCTCCAGCTCAATTCACCGGACCACCACGGCGTCATCGTCAGAGCCTTCACCGAGATCTGGAACGGCGTTTTCTCCGTCAGCTCCGGCGCCACCGCATTCCACCGCAACCGTAAGACTCGTGACTTTTAG 546 0.5623 MSSSARKLTFNTVSVSLGCGTCRRPKLLRHIFHPKRRPKRPTFRAQTHHWSQDRDDTTTTATSTTTTTTTFSPCHVDSSTQFCDYAKSVRGFGRVGSEGVAVEKDSDDPYLDFRHSMLQMILQNEIYSKDDLRELLNCFLQLNSPDHHGVIVRAFTEIWNGVFSVSSGATAFHRNRKTRDF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00156 181 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vimu3g00156 181 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 45 164 IPR038933 GO:0045892
Vimu3g00156 181 ProSiteProfiles OVATE domain profile. 102 161 IPR006458 -
Vimu3g00156 181 NCBIfam uncharacterized plant-specific domain TIGR01568 100 160 IPR006458 -
Vimu3g00156 181 MobiDBLite consensus disorder prediction 33 68 - -
Vimu3g00156 181 Pfam Transcriptional repressor, ovate 106 162 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00156 Vimu-Chr3 1293775 1294320 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu3g00156 Ovate 5.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00156 - - pvu:PHAVU_007G269800g 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00156 3 1293775 1294320 Vimu3g00156 3 1293775 1294320 ECH