Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00155 ATGAAGTTCTTTTCTCGTCTCAGAAACAACACCACCACCAACCACCACAGATCCTCCTGGCCATGGCCTTCTTGCCACCAACCCAGAACCCTCTCATTCAGAGCTACCACCGCCACCACCACCCCTAACCACCACCTTTCCGAACCCACCAACTCAATCGCTCAAACTCCAGACTCCTTCTTCACCGACTCACCTGACTCCGACAGTTTCTCCACCGCTTCCGACATATCCCAGACTGTCGACCCCACCGAGACGGTCATCCGCAGCCTTCGCTCCGACCGGCTTTTCTTCGAACCGGACCCGACCAGCTCCTTATGGGAAGCGAAACTCGCCACCCTCCCACCCTTCAAAAACAGTGTGGTTTTCTCCATGGACTCCACGCACCCTTACGTGGATTTCCGCCGCTCCATGGAAGACATGGTGGCCACGCACAGCGTCAGAGACTGGGAGGATCTCGAGGACCTTCTCTGCTGGTTCTTAAAGGTCAATGCACAAAACACTCACCACTACATCCTCCGTGCTTTCGTCGATTTCTTGTTCTCTCTTGCACTTGCTTCTTCTTCTCCTTCCAACGCCATTTGTAGTACCACCACCACTCTCTCTTCTCTCTCTTCTTCCTCCTCTTCTTGCACCACTCGATGCACTTTCTGTTTCGAAGAAGAAGCTCAACACCAACACATTTCTTAA 687 0.5298 MKFFSRLRNNTTTNHHRSSWPWPSCHQPRTLSFRATTATTTPNHHLSEPTNSIAQTPDSFFTDSPDSDSFSTASDISQTVDPTETVIRSLRSDRLFFEPDPTSSLWEAKLATLPPFKNSVVFSMDSTHPYVDFRRSMEDMVATHSVRDWEDLEDLLCWFLKVNAQNTHHYILRAFVDFLFSLALASSSPSNAICSTTTTLSSLSSSSSSCTTRCTFCFEEEAQHQHIS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00155 228 ProSiteProfiles OVATE domain profile. 122 181 IPR006458 -
Vimu3g00155 228 NCBIfam uncharacterized plant-specific domain TIGR01568 120 183 IPR006458 -
Vimu3g00155 228 MobiDBLite consensus disorder prediction 40 59 - -
Vimu3g00155 228 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 182 IPR038933 GO:0045892
Vimu3g00155 228 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g00155 228 Pfam Transcriptional repressor, ovate 126 182 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00155 Vimu-Chr3 1282196 1282882 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu3g00155 Ovate 1.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00155 - - vra:106771683 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00155 3 1282196 1282882 Vimu3g03602 3 48774292 48775032 ECH
Vimu3g00155 3 1282196 1282882 Vimu3g00155 3 1282196 1282882 ECH
Vimu6g02301 6 20110597 20111385 Vimu3g00155 3 1282196 1282882 PCT