Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00152 ATGGGTGTGAAGGTTTCCGGTGGTTGTGAAGTTGACGGTTATGGAAGTTTCTGGTTGACGTTTCGATTTTTCTCGTGTCTGTCGTGTGTGGCTTTGAGATTATTTACGGGGGGTTCTGGGAGAAAGAGTCACCAGGCTCTTGTTTTTAGGTTGACAAAAGCTGGAGTGGCTTTGCTGAAGCACAGGAGGAAAAAGCTTAAGCCTTTTCAGTTTGATTTTGACCTTGAGGAACAAGGGTCTAGGTGTAGATTGAGGCTTAATACGGGGTCCATTTGGTTCAAAATTAGGGAGCTTGAGAAAGTCACTGATAATTTTTCATTTCAGAACTTGATTGGTCGTGGTGGGTTTGGGTTGCTTTATAAGGGAACCTTGCTTGATGGGATTGTGGTGGCGATTAAAAGGTTTTTGGAATCTGATTTCCAAGGAGACATGGAGTTTTGTAATGAGGTGGAGATTGTTAGCAACCTGAAACATCGCAATCTGGTGCCTCAGAGAGGCTATTGTGTGGCTGAGGAGAGTGATAATTATGATGAAAGGGGAAGCCAAAGAGGAAGATTTGTTTATGTCATCGGACTCTCCGAATGCAAAGAGATCATTGACATGGCCTGA 609 0.4368 MGVKVSGGCEVDGYGSFWLTFRFFSCLSCVALRLFTGGSGRKSHQALVFRLTKAGVALLKHRRKKLKPFQFDFDLEEQGSRCRLRLNTGSIWFKIRELEKVTDNFSFQNLIGRGGFGLLYKGTLLDGIVVAIKRFLESDFQGDMEFCNEVEIVSNLKHRNLVPQRGYCVAEESDNYDERGSQRGRFVYVIGLSECKEIIDMA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00152 202 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Vimu3g00152 202 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 49 171 - -
Vimu3g00152 202 ProSiteProfiles Protein kinase domain profile. 105 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00152 202 FunFam Somatic embryogenesis receptor kinase 1 73 177 - -
Vimu3g00152 202 SUPERFAMILY Protein kinase-like (PK-like) 85 171 IPR011009 -
Vimu3g00152 202 Gene3D Phosphorylase Kinase; domain 1 73 175 - -
Vimu3g00152 202 Pfam Protein tyrosine and serine/threonine kinase 106 172 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00152 Vimu-Chr3 1233464 1234285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00152 76 179 Receptor kinase-like Gene Family AT1G11050 65.385 7.09e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vimu3g00152 PK_Tyr_Ser-Thr 2.4e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00152 - - gmx:100806560 233.032