Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00148 ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGAGCCCGTCGTGTCTAGGAACTCTGGTCTTCTCTTCGAGAAGCGTTTGATTGAGCGACACATTTCGGATTATGGCAAGTGTCCAATTACTGGTGAACCACTTACTATGGATGACATTGTACCAATCAAGACAGGGAAGATAGTGAAGCCCAGACCTGTCCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGTATGGAATTTAGGCTATGAAGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACGGCTAGGCAAGAGCTAAGTCATGCTCTCTACCAGCATGATGCTGCATGCCGAGTGATTGCTAGACTTAAAAAGGAACGAGATGAAGCTAGGTCCTTACTTGCGCAAGCAGAAAGGCAGTACCCTGTTTCTGCACTAAATGCTCCAACTGCAAATGCCCCTGTTCTGAGCAATGGAAAAAGAGCTGCTGAGGATGAGGATCTGGCTCCTGGTGCAAAGAAAATTCATCCTGGAATATCTTCTAGCGTGATTTCTGAGCTAACTGATTGCAATGCTGCTCTCTCCCAGCAGAGAAAGAAGAGACAGATTCCTGCCACTTTGGCTCCTATTGAAGCTCTAGAGTCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCCCTTGATATCCTTTATTCTAAGGACTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCTTCAGGACAGATATTATCTACACTAAGTGGTCACTCCAAAAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCAATCTTAACTGGTTCAGCAGATAAGACAGTTCGTCTGTGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGGCTCCTTTTGTCTCTGATCTACCCAGATGTAGTATAGCTTGTTGCCGTCCAAAATTTAGTTTGGTCATTGGATTTGTTTTCATGTCTGGAAAATCTAAAGAATTTAGTACTACTACATATAAGGTGCAAGCTGTCACTGTCCATGCTACCAATAATTATTTTGTGACTGCTTCACTTGATGGCTCTTGGTGCTTTTATGAACTTTCTTCAGGGACATGTTTGACTCAGGTTTTCGACTCTTCAGGTTCTTCTGAAGGCTACACATCAGCAGCATTCCATCCTGATGGTCTCATCCTTGGAACTGGCACCACAGAATCTCTTGTTAAGATCTGGGATGTAAAAAGCCAGGCAAATGTTGCTAGGTTCGATGGACATGCTGGTCCAGTAACTGCCATTTCTTTTTCTGAGAACGGATACTTCCTTGCGACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGGAAATTGAAGAACTTTAGGAATTTTGCTCCATATGATTCGGAAACACCAACAAACTCTGTGGAGTTCGACCACAGTGGATCCTACCTTGCAATTGCTGGTTCGGATATAAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTATTAAAACTTTCCCTGATTTATCCGGAACAGGTAAGGCCACGTGTGTAAAATTTGGTGCAGACTCCAAATACATAGCTGTTGGATCAATGGACCGGAATCTTCGAATATTTGGCTTGCCTGGCGAAGATGCTCCCAGTGAGTCATAA 1722 0.4326 MNCSISGEVPEEPVVSRNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNVWNLGYEEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQYPVSALNAPTANAPVLSNGKRAAEDEDLAPGAKKIHPGISSSVISELTDCNAALSQQRKKRQIPATLAPIEALESYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESILTGSADKTVRLWQGSDDGNYNCRHILKDHTAEAPFVSDLPRCSIACCRPKFSLVIGFVFMSGKSKEFSTTTYKVQAVTVHATNNYFVTASLDGSWCFYELSSGTCLTQVFDSSGSSEGYTSAAFHPDGLILGTGTTESLVKIWDVKSQANVARFDGHAGPVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFAPYDSETPTNSVEFDHSGSYLAIAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGADSKYIAVGSMDRNLRIFGLPGEDAPSES 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00148 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 475 - -
Vimu3g00148 573 SMART WD40_4 262 301 IPR001680 GO:0005515
Vimu3g00148 573 SMART WD40_4 391 432 IPR001680 GO:0005515
Vimu3g00148 573 SMART WD40_4 476 515 IPR001680 GO:0005515
Vimu3g00148 573 SMART WD40_4 522 563 IPR001680 GO:0005515
Vimu3g00148 573 SMART WD40_4 217 259 IPR001680 GO:0005515
Vimu3g00148 573 SMART WD40_4 348 387 IPR001680 GO:0005515
Vimu3g00148 573 SMART WD40_4 435 473 IPR001680 GO:0005515
Vimu3g00148 573 Pfam Prp19/Pso4-like 66 138 IPR013915 -
Vimu3g00148 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 435 - -
Vimu3g00148 573 SUPERFAMILY RING/U-box 1 53 - -
Vimu3g00148 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Vimu3g00148 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Vimu3g00148 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Vimu3g00148 573 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Vimu3g00148 573 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Vimu3g00148 573 Pfam WD domain, G-beta repeat 263 300 IPR001680 GO:0005515
Vimu3g00148 573 Pfam WD domain, G-beta repeat 438 473 IPR001680 GO:0005515
Vimu3g00148 573 Pfam WD domain, G-beta repeat 523 562 IPR001680 GO:0005515
Vimu3g00148 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
Vimu3g00148 573 CDD RING-Ubox_PRP19 1 54 - -
Vimu3g00148 573 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 321 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Vimu3g00148 573 Coils Coil 122 142 - -
Vimu3g00148 573 CDD WD40 233 562 - -
Vimu3g00148 573 SUPERFAMILY WD40 repeat-like 227 562 IPR036322 GO:0005515
Vimu3g00148 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 482 IPR001680 GO:0005515
Vimu3g00148 573 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Vimu3g00148 573 Gene3D - 349 564 IPR015943 GO:0005515
Vimu3g00148 573 Gene3D - 208 335 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00148 Vimu-Chr3 1199944 1207425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00148 1 573 U-box Gene Family AT1G04510 68.761 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00148 K10599 - gmx:100527039 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00148 3 1199944 1207425 Vimu3g00148 3 1199944 1207425 ECH