Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00147 ATGTTGTTCACAATGCTTATATGCCATCACTCACTGCAGGATGAGATTTCAAGCCCAATCAGTGCTCGATATTTCGAACTTTGTGACCCTGATTTTTTCCAAGACACACTGCAAAATTCTGAGGTTACCTCCAGCTCAAATTGTTGCCATGAAGACAAGTCCTCATATGCCACAACCATATCTCCACCTTTAGATGCAGTAGACAACAAGATCAATATCAATATCAATAGCAACATAGTCACCACCTCATCTAGTACTACCACAGCCAGCACCACTACCAACAACAATAACAACAACAACCTCAACAACAACAACAACACAACAAACAGCAATAACCTGTCTCTCTTCTTTGACTCTCCAGATGATCCTGACAATGACATATCAGCCTCCATAAACTTCTCACCCTCTCCTTCTTTTGTTGTTCCACCACTTCTCCCAATCACAACTCAGCAGGATCATTTTGATTTCTCTTCAGCTCAGCAACAGCTGCATCTATCAGCTTCAGGTTCAGTTTTGAAGGGCCTCTCTCAGTACCCTACTGATCCTGTGGTTGCACCCCTTATTGGGGCTCCATTAGCCTCAGTTTTTGATGATGATTGCATCTCTTCCATCCCTTCTTATGTGCCTCTCAATCCTTCATCTCCCTCTTGCTCTTATCTCAGTCCTGGCATAGCAGCCTACATGCCTCCTCCTGGTTCCCTTACCACTGCGTTATCTGCTGACAGTTCTGGATTGTTTGGTGGGAACATTCTACTTGGGTCTGAACTGCAGGCACAAGAATTGGACTACCAGGGAGAAAATGGTGGAATATATTGTACAGATTCAATTCAGAGGGCACTTGGTAATGAGAGTCAGAAACTGGTATCTGCTGGGGGCTCTAGCACTTTGGGACCAGAAATTTCACACTTGGAGGACTCTACCTTGAAGGTTGGAAAACTTTCTGTTGAGCAGAGGAAGGAAAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAACTTCAGCAAGAAAATCAAGTATGCTTGCCGCAAAACTTTGGCAGATAGCAGGCCACGGGTCAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATAGCCATAGACAAGGAAGTAGCAACCATGAAGAAGATGATGAAGAGATAATTGTGAAAGAAGATGATGATTTGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGGGTGAACTCTTTCAAATGCAACTATTCCATTCAGTCATTGATTTGA 1248 0.4287 MLFTMLICHHSLQDEISSPISARYFELCDPDFFQDTLQNSEVTSSSNCCHEDKSSYATTISPPLDAVDNKINININSNIVTTSSSTTTASTTTNNNNNNNLNNNNNTTNSNNLSLFFDSPDDPDNDISASINFSPSPSFVVPPLLPITTQQDHFDFSSAQQQLHLSASGSVLKGLSQYPTDPVVAPLIGAPLASVFDDDCISSIPSYVPLNPSSPSCSYLSPGIAAYMPPPGSLTTALSADSSGLFGGNILLGSELQAQELDYQGENGGIYCTDSIQRALGNESQKLVSAGGSSTLGPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDSHRQGSSNHEEDDEEIIVKEDDDLVDSSDIFAHISGVNSFKCNYSIQSLI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00147 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 88 373 IPR045281 GO:0009909
Vimu3g00147 415 ProSiteProfiles CCT domain profile. 318 360 IPR010402 GO:0005515
Vimu3g00147 415 MobiDBLite consensus disorder prediction 356 378 - -
Vimu3g00147 415 MobiDBLite consensus disorder prediction 356 380 - -
Vimu3g00147 415 MobiDBLite consensus disorder prediction 83 111 - -
Vimu3g00147 415 Pfam CCT motif 318 360 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00147 Vimu-Chr3 1173680 1176117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00147 297 366 C2C2-CO-like Transcription Factor Family AT5G24930 41.429 3.98e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu3g00147 CCT 5.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00147 - - gmx:100793417 605.905