Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00142 ATGGCAACAAGCGAAGAAGTGGTTGCGGCGGCGCCGGCGCCGGAGGCAGGGCTGAAGCACAAGCTGGAGCGAAAATGGACGTTTTGGTGCGACAATCAGTCCAAACCTAAACAGGGCGCTGCTTGGGGAACCTCTCTGCGTAAGGTCTACACTTTCGACACTGTAGAAGATTTGTATGATCAGATATTTAAGCCCAAGGAGTTGCAAAACAACGCGGATTTTCACTTGTTCAAGGCTGGTATTGAACCTAAGTGGGAAGATCCTGAGTGTGCCAATGGAGGAAAGTGGACTGTCACCAGCAACATCGGCCGGAAGGATAACCTTGAGAAGATGTGGCTTGAAACTCTGATGGCGTTGATTGGGGAGCAATTTGAGGATGCTGAGGACATATGCGGTGTGGTTGCTAGTGTGCGCCAATGGCAAGACAAACTTTCACTGTGGACAAAGACAGCGGCAAATGAGGCTGCCCAGGATGATTAA 480 0.5062 MATSEEVVAAAPAPEAGLKHKLERKWTFWCDNQSKPKQGAAWGTSLRKVYTFDTVEDLYDQIFKPKELQNNADFHLFKAGIEPKWEDPECANGGKWTVTSNIGRKDNLEKMWLETLMALIGEQFEDAEDICGVVASVRQWQDKLSLWTKTAANEAAQDD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00142 159 ProSitePatterns Eukaryotic initiation factor 4E signature. 73 96 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Vimu3g00142 159 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 14 156 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vimu3g00142 159 Gene3D RNA Cap, Translation Initiation Factor Eif4e 2 159 IPR023398 -
Vimu3g00142 159 Pfam Eukaryotic initiation factor 4E 21 157 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vimu3g00142 159 FunFam Eukaryotic translation initiation factor 4E 11 159 - -
Vimu3g00142 159 SUPERFAMILY eIF4e-like 7 155 IPR023398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00142 Vimu-Chr3 1135897 1137143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00142 1 156 Eukaryotic Initiation Factors Gene Family AT5G35620 65.269 1.13e-64 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00142 K03259 - gmx:100499799 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00142 3 1135897 1137143 Vimu3g00142 3 1135897 1137143 ECH