Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00130 ATGTTGAAGTCAGTGTCATTTGGAGTGTTGTTAACTTGGTTTGTGGTGGTGACGTGTGTGTGTGGAGCAGATGTTCAAAGATGTAACTGTGATGATGAGTGGAGCTTCTGGACTATTGATACCATTCTGGAGTGCCAAAGGGTTGGTGATTTTCTGATTGCTGTGGCCTACTTCTCCATCCCTGTTGAGCTGCTTTACTTTGTTAGTTGCTCAAATCTCCCATTCAAATGGGTCCTCTTTGAGTTCATTGCTTTCATTGTACTTTGTGGGATGACACATTTGCTGAATGGGTGGACTTATGGTCCCCACACTTTTCAACTAATGGTGGCAATCACTGTGTTCAAAACTCTCACTGCCTTGGTTTCATGTGCCACTGCTCTAACTCTCCTCACTCTGATCCCTCTGCTGTTGAAAGTGAAGGTTAGGGAGTTCATGCTGAAGAAAAAGACCTGGGATCTTGGCAGGGAGGTTGGCTTCATAATGAAACAGAAGGAAGCTTCGGTGCATGTAAGAATGCTTACTCAAGAGATTCGAAAGTCCTTGGATAGGCACAAGATTCTGTACACCACCTTGGTTGAACTGTCCAAGACACTTGGTTTGCAAAACTGTGCAATTTGGATGCCAAATGATGAGAAAACTGAGATGAACCTTACTCATGAATTGAATGGGAGGAATGCCAACTGTTCTATTCTCATAACTGATCCTGATGTTGCCAGAATCGAGGGGAGTGATGAAGTAAACGTGATTGATTCTGATTCAGTGCTTGCCACTGCCAGCAGTGGAGATTCTGGTGTGGCAGGACCAGTTGCTGCAATCCGAATGCCAATGCTTCGGGTTAGCAATTTCAAAGGGGGAACGCCGGAGCTAAGGCAGACATGTTATGCCGTATTGGTTTTGATTCTCCCTGTCACGGAGGCTAAATCATGGAGCACTCAAGAGCTGGAGATCATCAAAGTGGTTGCTGATCAGGTGGCGGTGGCTCTGTCTCATGCTGCAATTCTTGAAGAGTCTCATATGATGAGGGGGAAGTTGGAAGAACAAAATCGAGCATTGCAAGTGGAAAAGATTAATGCTATGAAGGCCAACCAGGCCAGAGCAGCATTTCAGAAAGTCATGAGTAATGGAATGGGAAGGCCTATGCACTCAATCTTGGGGCTGCTTTCAGTGATGCAGGAAGAGAATTTAAAGCGTGAACAGAAACTCGTTGTGGATTCTATGTTCAGAACCAGCACTGTGATGTCAAACCTGCTGAATGATGCCATGGACTGGTCATCAAGGGATGATGGAAGATTCCCTTTGGAGATGAAGCCTTTTGGACTGCATGATATGGTGAAGGATGCAGCTTGCTTTGCCAGGTTCATGTGTGTTTATAGGGGTCTTGGCTTTGTTATTGATGCTGATAAGTCTTTGCCAGACAATGTTATAGGTGATGAAAAGAGGGTCTTCCAAGTGCTTCTGCATATGGTTGGGAGTGCAATAAATGGTAACCGAGGAGGAGGGGTTCTTGTGCTCCGAGTTTATGCAGAAACTGGAAGTCAAGGGAGGACAAATTGGAGACCAAGCTCTTCAAATGGGGATGTAAATATCAGATTTGAGATAGGGATCAAAACTGGTGACTCTGAAATGGACAATCCAGTTCCTTCAGGGTACCTTCCTGGTACAATGCGTGCTACTGATTCGGTTGAGCAAAGATTGAGCTTCAGCATTTGCAAGAGGATAATTCAGTTGATGCAAGGAAACATATGGTTTGTACCAAACGGTGAAGGTGATCCTCAGGTGATGGCCATTACTCTACGGTTTCAACAGCAGCGATCTGTTGTTGCTGTGTCGATGAGTGAAACTGGGGAAAGTTCTGAGGCGTCAAATTCGAACTCTTTTTTCAGAGGTCTGCAAGTGTTGTTGGTGGAGAAGGATGATGTAAATAGAGCAGTGACTCAGAAGTTGCTGCAGAAACTAGGGTGCTGTGTGACTTGTGTATGTTCAGGATTTGAATGTCTGAGTGTGATTGGAGGTGGTGGATGCTCTTTTCAAGTGATTGTTTTGGATGTTCACATGCCTGAGCTTGATGGGTTTGAAGTTGCATCAAGGATTCGCAAGTTCGGCAGCAGAAACTGGCCGGTGATTGTCGCCTTGACTGCAAGCACAGAAGATTTCTGGGAAAAATGCATGCAAGTTGGCATCAATGGAGTCATAAGAAAACCACTTTTGTTGCATGGAATTGCCGCTGAACTCAGAAGAATCCTGTTGCAGGGAAATACTCTCATGTGA 2268 0.4502 MLKSVSFGVLLTWFVVVTCVCGADVQRCNCDDEWSFWTIDTILECQRVGDFLIAVAYFSIPVELLYFVSCSNLPFKWVLFEFIAFIVLCGMTHLLNGWTYGPHTFQLMVAITVFKTLTALVSCATALTLLTLIPLLLKVKVREFMLKKKTWDLGREVGFIMKQKEASVHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAIWMPNDEKTEMNLTHELNGRNANCSILITDPDVARIEGSDEVNVIDSDSVLATASSGDSGVAGPVAAIRMPMLRVSNFKGGTPELRQTCYAVLVLILPVTEAKSWSTQELEIIKVVADQVAVALSHAAILEESHMMRGKLEEQNRALQVEKINAMKANQARAAFQKVMSNGMGRPMHSILGLLSVMQEENLKREQKLVVDSMFRTSTVMSNLLNDAMDWSSRDDGRFPLEMKPFGLHDMVKDAACFARFMCVYRGLGFVIDADKSLPDNVIGDEKRVFQVLLHMVGSAINGNRGGGVLVLRVYAETGSQGRTNWRPSSSNGDVNIRFEIGIKTGDSEMDNPVPSGYLPGTMRATDSVEQRLSFSICKRIIQLMQGNIWFVPNGEGDPQVMAITLRFQQQRSVVAVSMSETGESSEASNSNSFFRGLQVLLVEKDDVNRAVTQKLLQKLGCCVTCVCSGFECLSVIGGGGCSFQVIVLDVHMPELDGFEVASRIRKFGSRNWPVIVALTASTEDFWEKCMQVGINGVIRKPLLLHGIAAELRRILLQGNTLM 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00130 755 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vimu3g00130 755 Gene3D - 330 427 - -
Vimu3g00130 755 PIRSF Ethylen_sen_hybr_HK 1 755 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vimu3g00130 755 SUPERFAMILY CheY-like 627 748 IPR011006 -
Vimu3g00130 755 Gene3D - 162 329 IPR029016 -
Vimu3g00130 755 Pfam Response regulator receiver domain 632 735 IPR001789 GO:0000160
Vimu3g00130 755 CDD HATPase_ETR2_ERS2-EIN4-like 470 598 - -
Vimu3g00130 755 Gene3D - 609 747 - -
Vimu3g00130 755 ProSiteProfiles Response regulatory domain profile. 631 748 IPR001789 GO:0000160
Vimu3g00130 755 Gene3D - 428 606 IPR036890 -
Vimu3g00130 755 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 750 - -
Vimu3g00130 755 FunFam Ethylene receptor 4 331 425 - -
Vimu3g00130 755 SUPERFAMILY GAF domain-like 185 331 - -
Vimu3g00130 755 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vimu3g00130 755 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 433 586 IPR036890 -
Vimu3g00130 755 CDD REC_ETR-like 630 744 - -
Vimu3g00130 755 SMART REC_2 630 744 IPR001789 GO:0000160
Vimu3g00130 755 SMART gaf_1 182 338 IPR003018 GO:0005515
Vimu3g00130 755 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 430 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00130 Vimu-Chr3 1046387 1048894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00130 24 748 Miscellaneous Gene Families AT3G04580 53.763 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu3g00130 GAF 2.1e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00130 K14509 - gmx:100802948 1172.53