Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00128 ATGAAATCAAATAAGACACTCTCAAGAACAGCAATTCTGGCTAATCCTTGGTGGACCGGTCATCAGGTGGGGTTGGGTGCAGGGGTAGACCCTGCGACCAATTCGCCATCTTCCACCTTAAACAAACGTCACATGGACCTTTCCATCAACGAGAGAAGCTTCGGCAGAGAAAGAGAAGATGAAGAGGAAGAAGATAGAGACAACGGCGATGAACCCAAAGAGGGTGCTGTCGAGGTTGGAACTCGCAGGCCCAGAGGGAGACCACCGGGCTCCAAGAACAAGCCCAAACCACCAATCTTTGTCACCAAGGACAGCCCAAACTCCCTCAGAAGCCATGTCATGGAGGTTGCCGGTGGCGCAGACGTCGCCGAAAGCGTCGCCCAGTTCGCTCGCCGCCGCCAGCGTGGGGTGTGTGTCCTCAGTGGGAGCGGTTCTGTTGCCAACGTCACTCTCCGGCAACCGGCAGCGCCGGGAGCGGTTGTGGCACTGCATGGAAGGTTTGAGATTTTATCCCTAAGCGGAGCGTTTCTGCCTGGCCCTGCTCCCCCAGGTGCCACCGGACTTACTGTGTATCTGGCCGGAGGACAGGGCCAGGTTGTAGGAGGAAGCGTTGTTGGTCCTCTTGTGGCAGCTGGACCAGTGATGATTATAGCTGCCACTTTTGCTAATGCTACATATGAGAGGTTGCCACTTGAAGAGGAGGATGAAGATGGTGGCGGTGGTGGCAGTGTCCAAGGAGGAAGTACTCTGGGAGGGTCTCCTCCTGGAATCGGTAGCAGTGGCGGTGGTGGTGGTGGTGGTGACGGTGTGAGTGGTGGAAGCCACTTGCCCGGTGGGATTCCCGATCCTTCTTCTTTGCCTTTGTATAACCTTCCACCAAACCTTCTATCCAATGGAGGAGGCCAAGTGGGGCATGAGGCTTTTGCTTGGGCACATGGCCATGGAAGACCACCTTTCTGA 960 0.5594 MKSNKTLSRTAILANPWWTGHQVGLGAGVDPATNSPSSTLNKRHMDLSINERSFGREREDEEEEDRDNGDEPKEGAVEVGTRRPRGRPPGSKNKPKPPIFVTKDSPNSLRSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLSGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGPLVAAGPVMIIAATFANATYERLPLEEEDEDGGGGGSVQGGSTLGGSPPGIGSSGGGGGGGDGVSGGSHLPGGIPDPSSLPLYNLPPNLLSNGGGQVGHEAFAWAHGHGRPPF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00128 319 FunFam AT-hook motif nuclear-localized protein 109 236 - -
Vimu3g00128 319 MobiDBLite consensus disorder prediction 45 59 - -
Vimu3g00128 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 110 222 IPR005175 -
Vimu3g00128 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 52 312 IPR014476 GO:0003680
Vimu3g00128 319 CDD DUF296 110 193 IPR005175 -
Vimu3g00128 319 Gene3D - 109 236 - -
Vimu3g00128 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 235 - -
Vimu3g00128 319 ProSiteProfiles PPC domain profile profile. 106 245 IPR005175 -
Vimu3g00128 319 MobiDBLite consensus disorder prediction 19 107 - -
Vimu3g00128 319 MobiDBLite consensus disorder prediction 232 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00128 Vimu-Chr3 1022685 1027672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00128 13 319 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.194 7.81e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00128 - - var:108341460 337.421