Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00125 ATGGAGGAAGAAGAACCTTCCATAACATCGCCACCTCCAGGAGCGTTTCGCAAGTTCCTCTTCCGCAGTGGCAAGCCTGTCATCGCCGCGAAGCCTCTCACTGTGGTCCGCTCCACCACCAGCAACGGCGGCGCGCGCGTTCTTGCCGTGCAGCCAAACCCTAACGAGAACAATGCTCTCCAAGAAGAAGGACAAGGCGAAACCGGCTTCGATGTTTCTTATTTCAACGCACTGGACAAAAGGCAACAACAACAACGACAAAGGCTCGAGGAGTTTCTCAAGTGCACGAACACGAAGGTCGCTTCCAAAGGAGAGTCTTTGAAATCGATGGTGCCATTGGAAGAAGAAGTAGAAGAAGAGGAGGAGGAAGGCGATGAGGCAGAATCAACTCCACCGGTTCAACCGGTTAGGATAGTGTCGGAACCGGTTCCACCGGTGCAGACAACAGCGGTTAGTGATGATGTGGAGGCGGTGGCGGTGTGCAAGGATGTGGAGAAGAGGAATATTCCTAATCTCGAGGACGGGGAGTTTCCGGAGGAGGCTGGATGGTTCTTGCTTGGGAGGAAGGCTGAGGTTGCGGTTTCGACTGCCAGAGGAGTGCGCAGATTGGTGGACAATGAAATCGTTCATTTCAACTTTCCTCTGCCGACTTACTCGAGGAAGTCTCAGTTGATCGTTCGTGTTTCAACCAAGCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAGTGGGCAAAGATTGTGATTCCACTTATGCGCTCTGGAAAGGTCAAGGTTCGAGGCCGATGCATTGCTGCCCCAGATAAACTAGAGATGATGCAAGAGATTCTGTTTTTAGTGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATGTACCCAATTCTCGCGCTATTAAAAATGCTAGAGATCAAGCCATCTCGAAAGGCTGAATTCATGCCAGAAGATATAGATTCTCGAAAGCGGTTGCTCTATCCAAGGGCTGGGTCAGATGAAGCTGCAGCATTGCATTTGATCAAGCGAAGAAAGGGTAGCGAGCCTATTCCCGAGCAAAATAATGACGAACAGGCTCTTTCAGAGTCAGCTTTAAACAAAATTGTTGGAGCTGCAGAAATCTATGACTTAAAGGAGAAGGAAGCCCCAAAGACACTTATGTGTAATCTAAAGCCTTACCAGAAGCAGGCTCTGTATTGGATGGATGAAATCGAGAAGGGAATGGATGTTGAGAGTGCAGAAAGAACTCTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGCAGAAGGACTATTTATGTCAATACGTTTACCGGAGAAGCTTCAAATAAATTTCCCAAAAAAACGGAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCCGAGGCAACTCAGAAAACAAGGATGCGATAAATGGATACGATGATATTATAGCAAATAAAAGAAAGAACGCTTACGCGATGCATAAAGTCGAGGGTGGCACTCTAATTGTTTGTCCCTTGGCTTTGTTAGGTCAATGGAAGGCGAGTGATGAGCTTGAAACGCATTCAAAGCGCGGTAGTATATCCATATTTGTTCATTATGGTGGCGGAAGAACCGATGATCTCTTGTTCATCTCAGGGCATGACGTTGTCTTAACAACTTATGGTGTCCTATCAGCTGAATACAAGAATAATGGAGGCAATAGCATCTATCACAAGATCCAATGGTACAGGGTGGTGCTGGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGGTTTCCCAGGCTGCTTTTACTCTCTCAGCACACAGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAGGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCTAAGATCCCTGAAGCTGGTCAAAGCCATTTTGAAGATGCTAATGCTAAGAAGAACGAAGGAATCGAAAGATAAAGAGGGAAGGCCTATACTTCTCCTGCCTCCAATTGACATTGAATTGATTGAATGTAAACAATCAGAGTGTGAACGTGACTTCTACGAAACCCTTTTCGAGCGATCTAAAGTTCAATTTGATCAGTACGTTGCACAAGGAAATGTTTTACACCATTATGCCAATATCCTTGACCTTCTAATGCAGTTGAGACGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGGAAGCGATTCCCGTAAGTATGCAGACTTGGGCAGAATCGCAAGAAGATTTCTTCAGTCTGATACTGGTTCACCCAACGAAAGCAATCAAGATGATCCACAGCTGCAAGCAGAGGTGAACAAACTCGCAAGTATATTACTTAATTTCGCTTCTCCGGACTCTATCCAACCTCGTGCATACATTGAAGAGGTTTTGGAGAATATTCAAAAGGGCGACCCAGGAGAATGCGCAGTATGTTTGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCTCATAAATTTTGTAGAGAATGTCTATTCAGTTGCTGGGGCACCCCAGCGGGTGGCCAATGTCCAATGTGTCGTAATTTGCTCCAGAAAGATGATCTGATCACTTGTCCGTCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCGAAGTTTTCAAAGCTATTCGAATTCCTGGAAGGTATTCTGAACTCACCCGCGGGTGAAAAGAGTGTAGTCTTCAGTCAGTGGACTTCATTTTTTGATCTCTTGGAGAATCCATTTAGGCGGAGGGGCATTGGCTTTTTGAGATATGATGGAAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATAAAACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTAAAGGCTGGTGGTGTTGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCTCTTGAGGAGCAAGCCATAATGAGAATTCATCGCATAGGACAAAAGCGTAGAGTGAAAGTAAGAAGGTTCATTGTGAAGGACACAGTGGAAGATCGTTTGCAACAAGTACAGGCCAGGGAACAAAGGATGATATCTGGTACCCTCACCGATGATGAGGTTCGGTCTGCTAGGATCCAAGACCTCAAAATGCTATTCACCCGGTTCAATGATTTAAGTTTGAGATTCCAAACGTGTGCACCGCACGCCCCTCTATTTATACCCCTCAACCTCTACCCACCGTTTTCTCTCTCACACACCACACTACTGTCTCTCACTTTCTCTCTCACCGCCATCAATCTCACTCGCACCACCGTCACCATGGCCGACTCTCGCCGCGTCCGCCGCCAGCCCAGCCGCCTGCAATCTCACGCTCCCTCATCGCTTCAGATAAACCGCTCCGTCCAGTGGAACGTGGCGATCCCGCTGCTCTCCCCGCTGGCCTCGTCGCCGCCACCGCCCCCTCCTCCGCCGCAGAAGGATGAGCCTCCGCAGCAGCAGCAGCAGCAGCGGCCCCCGGAGAAAATCGTCTTCAAAAAGTGGCAGCACCCCGCAGCGCCGTTCTGCTACGAACCACCCTCGGTTGTTACACCCTTCGTTAACGAAGTTGATGAAAGTGGGTGTGAAGTCAAAGACAAAAGATGTTTGAAGACAGAAGATTGTGGAGATTGA 3726 0.474 MEEEEPSITSPPPGAFRKFLFRSGKPVIAAKPLTVVRSTTSNGGARVLAVQPNPNENNALQEEGQGETGFDVSYFNALDKRQQQQRQRLEEFLKCTNTKVASKGESLKSMVPLEEEVEEEEEEGDEAESTPPVQPVRIVSEPVPPVQTTAVSDDVEAVAVCKDVEKRNIPNLEDGEFPEEAGWFLLGRKAEVAVSTARGVRRLVDNEIVHFNFPLPTYSRKSQLIVRVSTKRSGEVGRMPMEWAKIVIPLMRSGKVKVRGRCIAAPDKLEMMQEILFLVRLEACGKIDDTMYPILALLKMLEIKPSRKAEFMPEDIDSRKRLLYPRAGSDEAAALHLIKRRKGSEPIPEQNNDEQALSESALNKIVGAAEIYDLKEKEAPKTLMCNLKPYQKQALYWMDEIEKGMDVESAERTLHPCWSAYTICKGRRTIYVNTFTGEASNKFPKKTEMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDAINGYDDIIANKRKNAYAMHKVEGGTLIVCPLALLGQWKASDELETHSKRGSISIFVHYGGGRTDDLLFISGHDVVLTTYGVLSAEYKNNGGNSIYHKIQWYRVVLDEAHNIKAHRSQVSQAAFTLSAHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDLRSLKLVKAILKMLMLRRTKESKDKEGRPILLLPPIDIELIECKQSECERDFYETLFERSKVQFDQYVAQGNVLHHYANILDLLMQLRRCCNHPFLVMCGSDSRKYADLGRIARRFLQSDTGSPNESNQDDPQLQAEVNKLASILLNFASPDSIQPRAYIEEVLENIQKGDPGECAVCLESPEDPVFTPCAHKFCRECLFSCWGTPAGGQCPMCRNLLQKDDLITCPSESPFKVDIKNNVTESSKFSKLFEFLEGILNSPAGEKSVVFSQWTSFFDLLENPFRRRGIGFLRYDGKLTQKQREKVLDEFNKTREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPALEEQAIMRIHRIGQKRRVKVRRFIVKDTVEDRLQQVQAREQRMISGTLTDDEVRSARIQDLKMLFTRFNDLSLRFQTCAPHAPLFIPLNLYPPFSLSHTTLLSLTFSLTAINLTRTTVTMADSRRVRRQPSRLQSHAPSSLQINRSVQWNVAIPLLSPLASSPPPPPPPPQKDEPPQQQQQQRPPEKIVFKKWQHPAAPFCYEPPSVVTPFVNEVDESGCEVKDKRCLKTEDCGD 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00125 1241 Pfam HIRAN domain 194 276 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vimu3g00125 1241 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 219 1072 - -
Vimu3g00125 1241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 905 1068 IPR001650 -
Vimu3g00125 1241 MobiDBLite consensus disorder prediction 47 64 - -
Vimu3g00125 1241 MobiDBLite consensus disorder prediction 47 68 - -
Vimu3g00125 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 828 883 IPR013083 -
Vimu3g00125 1241 Gene3D - 694 1080 IPR027417 -
Vimu3g00125 1241 Gene3D - 438 679 IPR038718 -
Vimu3g00125 1241 MobiDBLite consensus disorder prediction 1164 1194 - -
Vimu3g00125 1241 MobiDBLite consensus disorder prediction 114 128 - -
Vimu3g00125 1241 SMART helicmild6 936 1019 IPR001650 -
Vimu3g00125 1241 MobiDBLite consensus disorder prediction 104 137 - -
Vimu3g00125 1241 ProSiteProfiles Zinc finger RING-type profile. 835 875 IPR001841 -
Vimu3g00125 1241 MobiDBLite consensus disorder prediction 1164 1181 - -
Vimu3g00125 1241 Pfam Helicase conserved C-terminal domain 912 1019 IPR001650 -
Vimu3g00125 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 678 IPR027417 -
Vimu3g00125 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 1072 IPR027417 -
Vimu3g00125 1241 ProSitePatterns Zinc finger RING-type signature. 850 859 IPR017907 -
Vimu3g00125 1241 Pfam SNF2-related domain 390 756 IPR000330 GO:0005524|GO:0140658
Vimu3g00125 1241 CDD SF2_C_SNF 897 1030 - -
Vimu3g00125 1241 SUPERFAMILY RING/U-box 820 880 - -
Vimu3g00125 1241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 444 640 IPR014001 -
Vimu3g00125 1241 SMART HIRAN_2 186 283 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vimu3g00125 1241 FunFam DNA repair protein RAD5B 441 679 - -
Vimu3g00125 1241 Coils Coil 110 130 - -
Vimu3g00125 1241 SMART ring_2 835 874 IPR001841 -
Vimu3g00125 1241 Pfam Zinc finger, C3HC4 type (RING finger) 835 874 IPR018957 GO:0046872
Vimu3g00125 1241 SMART ultradead3 383 657 IPR014001 -
Vimu3g00125 1241 CDD DEXDc_SHPRH-like 387 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00125 Vimu-Chr3 967827 982742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00125 141 1071 RAD5 or RAD16-like Gene Family AT5G43530 58.945 0.0 1149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu3g00125 SNF2_N 3.3e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00125 K15505 - gmx:100806677 1665.2