Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00121 ATGGATTCCTTAGGTGACAGCAGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGCCCAATCACAGCACTGAAATTGAAATTCCAGATGATGCTGTTGCTTGTGAAGAGAACACCAAGAAGAGGTTCTGTGACCTGAGCTCGGTTTTGGAACCTGGGAGACCTGTGAGAACAGATAAACCATCTATACTCGATGATGCTATCAGAGTCTTGAGCCAACTTAAGACCGAAGCTCAGGAACTCAAAACAAAAAACGAAAAGTTATTAGAGGAAATAAAATGTTTGAAGCTAGCCCTTCCTCCAGTTAGTTTTGCAACTTCTGTTGATTCTGCCTATCAATATTTGCATATTCTTCCAGTTTTATGCATGACTAGACTAGCATGCGCTGAGAAAAACGAACTTCGTGAAGAGAAACTTGTTCTGAAAGCAGATAAGGAGAGGATTGAGAAGCAGTTGAAATCTTTGGCCATTGCTCCAGCAGGGTTTACGGCACCCCCTGTAGCTGCTGCTGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTACATTCCAATGTGGCAATATCTTCCTCAATCTGCCAGAGATACATCCCAAGATCATGAGCTTAGGCCTCCTGCTGCATAG 666 0.4384 MDSLGDSSCWDFLDYSFIDQAPPDFLWPNHSTEIEIPDDAVACEENTKKRFCDLSSVLEPGRPVRTDKPSILDDAIRVLSQLKTEAQELKTKNEKLLEEIKCLKLALPPVSFATSVDSAYQYLHILPVLCMTRLACAEKNELREEKLVLKADKERIEKQLKSLAIAPAGFTAPPVAAAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00121 221 Coils Coil 72 106 - -
Vimu3g00121 221 Gene3D - 44 109 IPR036638 GO:0046983
Vimu3g00121 221 Coils Coil 139 159 - -
Vimu3g00121 221 PANTHER BHLH TRANSCRIPTION FACTOR 48 104 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vimu3g00121 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 108 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00121 Vimu-Chr3 946281 949685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00121 42 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 53.514 7.67e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00121 - - gmx:100787583 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00121 3 946281 949685 Vimu3g00121 3 946281 949685 ECH