Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00120 ATGGATTTTGTGAGCCAAAGACACCTACTTCATTTACCAATACAAGCTGATTCACCTTGCACAGTTCCTCCAAATCATGATATTCCTCATCCTTCTGGTTCAAATCTTCCCCTCTTAGCAATCCTTGTGGTAGGAATGATGTTCACAACTTTCTTCCTTATAGGCTACTACATGTTAGTTGTCAAGTGCTGCTTCAATTGGCCCCATGTTAATCACACAAGACTATTTTCTCTGTCCAGACAAGGTGAAGAAGATCCATCTGCTGGATTCTCAGCAGCATCCGATCCAAGAGGGCTAGAGGAAGCAGTTATCAGGTTAATCCCTGTGATTCATTATAAGCCAGAAAAAGGGGATACAAACTTTGGTGAAAGAAGCAACCTTGATGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTCTGGCTTCAGAACAACACTCATTGCCCTCTCTGCAGAAGAATTGTGTCCTTGACAAGCCAGGTCCATGTTGACCAACCAAACCTTCTCACTCCAAGGTTTTCATCTCAAGACCAAAGCCAAAACATTGAAAACAATGTCAGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACATGATAGAGACCAAATCCTGGAAGGAAGACAAGACTTACCTACCATTGCTGTTTCTTCACAGAAGAATGCAAAGAAGCTTCATAAAGTGATCAGCTTGGGAGATGAGTGTATTGGCATCAGAGCCAAAGGTGAAAGCTTTTCATCAGTTCAAGCCATGAGGAGGTCCTTTTCCATGGATTCATCAGTGGATAGAAAGTTTTATGGGGCAATTCAGCAGGCTTTACAGCAACAGCAACAACATCATGAACATGTTCATGAGATTAACACAGTTGAATCCTGTGGTGGCAGTGACAGAGTGAAGAGATCACTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAATGCTGTACAACCTGTTGATTTGGAGGCATGA 1032 0.4186 MDFVSQRHLLHLPIQADSPCTVPPNHDIPHPSGSNLPLLAILVVGMMFTTFFLIGYYMLVVKCCFNWPHVNHTRLFSLSRQGEEDPSAGFSAASDPRGLEEAVIRLIPVIHYKPEKGDTNFGERSNLDDCAVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNTHCPLCRRIVSLTSQVHVDQPNLLTPRFSSQDQSQNIENNVSDEGFVVIDLDGEHDRDQILEGRQDLPTIAVSSQKNAKKLHKVISLGDECIGIRAKGESFSSVQAMRRSFSMDSSVDRKFYGAIQQALQQQQQHHEHVHEINTVESCGGSDRVKRSLFSFGHGSRSRNAVQPVDLEA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00120 343 SUPERFAMILY RING/U-box 113 178 - -
Vimu3g00120 343 PANTHER RING-H2 FINGER PROTEIN ATL16 21 339 IPR044600 GO:0016567|GO:0016740
Vimu3g00120 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 176 IPR013083 -
Vimu3g00120 343 CDD RING-H2_EL5-like 129 172 - -
Vimu3g00120 343 FunFam E3 ubiquitin-protein ligase ATL6 88 178 - -
Vimu3g00120 343 SMART ring_2 130 171 IPR001841 -
Vimu3g00120 343 Pfam Ring finger domain 128 172 IPR001841 -
Vimu3g00120 343 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00120 Vimu-Chr3 941204 942235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00120 32 327 C3H Transcription Factor Family AT1G04360 39.521 1.36e-65 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00120 - - pvu:PHAVU_007G272700g 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02731 6 23850861 23851687 Vimu3g00120 3 941204 942235 PCT