Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00119 ATGGACGAAGAAGGTTCAAAGGGAAAAGCGAAGGATGAAGAAGAGCATGTAAAGTACAGAGGAGTACGTAGAAGGCCATGGGGAAAATATGCAGCAGAGATTCGTGACTCAATGAAACATGGTCAAAGGTTGTGGCTTGGAACATTCACCACAGCAGAGGATGCTGCTAGAGCCTATGATAGAGCTGCATATGCCATGAGAGGTCCCTTTGCAGTCCTCAATTTTCCCGATGAATATCCTCCTCCAGCAGCACCAGATGTTCCTTCCTCTTCTTCGTCTTCCTCTTCTTCTTCGTCTGTGTCCATTTCAAGTCATGAACACGTGGAAAGAAGAGGAAGAAGAAGAGAAAGAAATGAGGATGAAAATCAAGTGTTTGAGTTTGAGTACTTTGATGACAAATTGTTGGAGGAGCTTCTTGGTTATGATGAAGACAAAAATAAGCATGGCAAGTGA 453 0.4349 MDEEGSKGKAKDEEEHVKYRGVRRRPWGKYAAEIRDSMKHGQRLWLGTFTTAEDAARAYDRAAYAMRGPFAVLNFPDEYPPPAAPDVPSSSSSSSSSSSVSISSHEHVERRGRRRERNEDENQVFEFEYFDDKLLEELLGYDEDKNKHGK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00119 150 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vimu3g00119 150 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vimu3g00119 150 MobiDBLite consensus disorder prediction 104 122 - -
Vimu3g00119 150 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Vimu3g00119 150 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Vimu3g00119 150 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vimu3g00119 150 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vimu3g00119 150 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vimu3g00119 150 MobiDBLite consensus disorder prediction 74 122 - -
Vimu3g00119 150 MobiDBLite consensus disorder prediction 88 103 - -
Vimu3g00119 150 PANTHER DNA-BINDING DOMAIN 11 144 IPR044808 GO:0003700|GO:0009873
Vimu3g00119 150 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Vimu3g00119 150 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00119 Vimu-Chr3 925189 925641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00119 13 145 AP2-EREBP Transcription Factor Family AT3G23230 54.887 5.22e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g00119 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00119 - - gmx:100781117 168.318