Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00118 ATGGAGAAGATGGAAAGCGAAGAGCATAACGAGTTGAAGGAGACAAAGGCAGCAGAAAAAGTTAGGTACCGTGGCGTCCGACGGCGGCCGTGGGGGAAGTATGCGGCGGAGATCAGAGACCCTTCTAAGCAAGGTTCAAGGTTGTGGTTGGGAACCTTTGAGAGTGCAGAAGAGGCAGCTAGGGCATATGATCATGCAGCTTTTTCCATGAGGGGTCGTGTTGCAATTTTGAATTTTCCTAATGAGTACCGTTCTCATGTTAGGGTTTATCCTCAAAATATACCATCACCACCATCATCATCATCATCATCATCCATTACTCATGCAAATGGTGGACAGCAAAGACAGGTTTTTGAGTTTGAGTATTTGGATGATAAGGTGTTGGAGGAGCTTCTTCAGTTTGAAGAGAAGAATAACACAGAAAGTTGA 429 0.4499 MEKMESEEHNELKETKAAEKVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFESAEEAARAYDHAAFSMRGRVAILNFPNEYRSHVRVYPQNIPSPPSSSSSSSITHANGGQQRQVFEFEYLDDKVLEELLQFEEKNNTES 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00118 142 MobiDBLite consensus disorder prediction 91 112 - -
Vimu3g00118 142 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Vimu3g00118 142 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vimu3g00118 142 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Vimu3g00118 142 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Vimu3g00118 142 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Vimu3g00118 142 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Vimu3g00118 142 MobiDBLite consensus disorder prediction 92 112 - -
Vimu3g00118 142 PANTHER DNA-BINDING DOMAIN 13 137 IPR044808 GO:0003700|GO:0009873
Vimu3g00118 142 FunFam Ethylene-responsive transcription factor 2 21 81 - -
Vimu3g00118 142 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Vimu3g00118 142 Gene3D AP2/ERF domain 21 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00118 Vimu-Chr3 915054 915482 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00118 19 137 AP2-EREBP Transcription Factor Family AT3G23230 65.574 1.55e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g00118 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00118 - - gmx:100814296 202.986