Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00114 ATGGATTCTTCTTGCATTCTCTATTCATCAAACTCTTCAGAATCCTCAGTAGGATCCCCTCATCACCATCTCCCTTTCAACGAAAACGATCTCGAAGAGATGCTGCTCTATGGCATGATCACATCATATCAAGAGCAAAACAATTCATGCAAACTCATCATCAAAGAAGAAGAGGTGAATTTAAAACAACACAAAAGTAGTAGTAATAGTAATGGTAAGAGTTACCGAGGTGTGCGAAGACGACCATGGGGAAAGTTCGCGGCAGAAATAAGAGATTCTACTCGACATGGCATAAGGGTATGGCTTGGAACATTCGACAACGCCGAGACTGCGGCGTTGGCGTATGATCAAGCTGCTTTTGCCATGCGAGGTTCTGCCGCGGTACTCAACTTTTCCGTTGAAAAGGTGAAAGAGTCATTGAGAGACATGGATTACTCACTCTCTCAACTTGAAGGTTGCTCTCCGGTTGTGGCCTTGAAGAGAAGACATTCATTGGGACGCAAAATGGCTGCAAAGAAGAAGAAGGAAGAGACACGAGAGAGTGATGGTGTTAGGTTAGAGAACGTGGTTGTGTTGGAAGACTTGGGAGAAGAGTATTTAGAACAATTGTTAATGATGTCTTCTGGTGAATTATAG 636 0.434 MDSSCILYSSNSSESSVGSPHHHLPFNENDLEEMLLYGMITSYQEQNNSCKLIIKEEEVNLKQHKSSSNSNGKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDNAETAALAYDQAAFAMRGSAAVLNFSVEKVKESLRDMDYSLSQLEGCSPVVALKRRHSLGRKMAAKKKKEETRESDGVRLENVVVLEDLGEEYLEQLLMMSSGEL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00114 211 CDD AP2 75 131 IPR001471 GO:0003700|GO:0006355
Vimu3g00114 211 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Vimu3g00114 211 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Vimu3g00114 211 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Vimu3g00114 211 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g00114 211 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Vimu3g00114 211 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Vimu3g00114 211 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vimu3g00114 211 PANTHER DNA-BINDING DOMAIN 49 204 IPR044808 GO:0003700|GO:0009873
Vimu3g00114 211 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Vimu3g00114 211 MobiDBLite consensus disorder prediction 1 24 - -
Vimu3g00114 211 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00114 Vimu-Chr3 881393 882028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00114 24 204 AP2-EREBP Transcription Factor Family AT3G23240 61.326 6.02e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu3g00114 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00114 K14516 - gmx:100780576 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02729 6 23839977 23840606 Vimu3g00114 3 881393 882028 PCT