Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00109 ATGGTTAGAGCTCCTTGCTGTGAAAAGATGGGATTGAAAAAGGGTCCTTGGACTCAAGACGAAGATCAAATACTCATATCATACATCCAAAAACATGGCCATGGAAACTGGCGTGCGCTTCCAAAGCTTGCAGGGCTATTGAGGTGTGGAAAGAGTTGCAGACTGAGATGGATTAACTACTTAAAACCTGATATCAAAAGAGGAAATTTCTCGAGTGAAGAAGAAGAGATTATCATCAAGATGCATGAGTTGCTGGGAAATAGGTGGTCAGCAATAGCAGCAAAACTACCAGGAAGAACAGACAATGAAATTAAGAATGTGTGGCACACTCATTTGAAGAAGAAGTTGGTGAATTCAGATAGCAAAAGGGTTGTTTCAAATCCAAAAATAAAACGATCTGATTCAAATTCCAGCACCCTAACATCATCGTCAGGATGCACTTCTTCCAGTGATTTTTCATCATTCAGTGAAGAAAACAAAAACATGAACAACAACAACAGCATGATCAAGAGTGAAGACACAGAGTCTGAGGAGACAACAATGCCTCCAATTGATGAAAGCTTTTGGTCAGAGGAAACAGTTGAAGATGAAAGCTCCACCATGATGATGCCATCATCAAATTCTTGGACAATTTCCAATGAACCACAATTTAATTATGTGGACACTTTCCAACAACACAGTTTTGGTTATAATGGTTCAAACTTTGATGATGGCATGGATTTTTGGTATGACATATTCATCAGATCAGAAGAGTCAATAGAGTTGCCGGAGTTCTGA 777 0.3912 MVRAPCCEKMGLKKGPWTQDEDQILISYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLVNSDSKRVVSNPKIKRSDSNSSTLTSSSGCTSSSDFSSFSEENKNMNNNNSMIKSEDTESEETTMPPIDESFWSEETVEDESSTMMMPSSNSWTISNEPQFNYVDTFQQHSFGYNGSNFDDGMDFWYDIFIRSEESIELPEF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00109 258 FunFam MYB-related transcription factor 13 66 - -
Vimu3g00109 258 CDD SANT 69 112 IPR001005 -
Vimu3g00109 258 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu3g00109 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu3g00109 258 MobiDBLite consensus disorder prediction 119 185 - -
Vimu3g00109 258 CDD SANT 16 61 IPR001005 -
Vimu3g00109 258 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 199 - -
Vimu3g00109 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu3g00109 258 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vimu3g00109 258 SMART sant 66 114 IPR001005 -
Vimu3g00109 258 SMART sant 13 63 IPR001005 -
Vimu3g00109 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu3g00109 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu3g00109 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu3g00109 258 Gene3D - 69 141 - -
Vimu3g00109 258 Gene3D - 13 66 - -
Vimu3g00109 258 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00109 Vimu-Chr3 827155 829099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00109 1 258 MYB Transcription Factor Family AT2G31180 49.248 2.85e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g00109 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00109 K09422 - gmx:100806975 385.956