Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00106 ATGGCAGATCTTTCTATATTTGGAAGTTCTGAGCGTCTCGAGCAAGATGAAACAAAGCTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTAAAATTAGCTGCTGTTTCACACATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTGATTTACAAGAAGGGGGAAAGATCACTTGATCTGATCTGCAAGGACCAAGCAGAGGTAGAGATATGGTTTTCATGCCTTAAAGCATTAATTTCCTCTGGAGATCGTATTAAGCGTGGAATAAGTGATTTAAGCAATGATTGTGTTGACTTTGTTGCTGGAACACTAGAGTTCGCATCAAGCATTAGCCGTAGCAGGTTTTCTTTTGAATCGGCATCTCATGAATCTACATCATCTTGGTCCAGATCGGATACAAATATGGCGCAGAGGACAAGTATCGGAGATGGTTCTCGTGTTAGTATATCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGAATAGATGACATAGAATCTCTTGGTGATGTTTTCATATGGGGAGAGGTTTGGGGAGATGGCAATTCATCTGATGGATTGGGGAGCCAAGCTTCTGGTAAGATTGATGTGTTGACTCCTAAGGCATTAGAATCTAATGTTGTTCTTGATGTCAATCAGATTGGGCCCGGTGTACGTCACATTGCGTTAGTTACAAGGCAAGGTGAGCTTTTTACATGGGGAGAGGACTCTGGTGGAAGACTTGGCCATGGCTTTGAAAAAGATTTTGGTCGACCTCATCTTGTAGAGTCCCTAGCAATTACCAACATGTCTTTAGTTGCATGTGGTGAATATCATTCATGTGCCGTGTCTGTATCTGGTGACTTGTTCACCTGGGGTGATGCTACAAATAGTGCAGGACTTCTTGGTCATGGCAGTGATGTTAGCTACTGCATCCCAAAGAGGGTGAGTGGCGCTTTAGATGGACATCAGGTTGTATCCGTAGCATGTGGCGCATGGCATTCAGCATTAGCAACCACCCTTGGGAAATTGTTTACCTTTGGTGATGGAAAATTTGGTGTATTAGGCCATGGAGATCGAGAGTGTGTATCATATCCAAAGCAGGTACAATTATTGAGTGGACAAAAGGCTATTAAAGTTGCATGTGGAGTGTGGCATTCAGCTGCTATTATAGAGATTATGGATCCTTCTGGTTCAAACCCTTCATCCAAGAAGATCTTCACATGGGGTGATGGTGATCAGTATCGTTTGGGTCATGTTAACAAGGAAAGTTACCTTCAACCAACTTGTGTAGCTGCCCTTGCTGATTATAGCTTTAACCAGATTGCATGTGGGTACACTATGACTGTTGCACTCACTGTATCTGGTCATGTTTTTACAATGGGAGGCACAACATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTCCCAATTCTAGTCCGAGATAAGTTGGTAGGTGAGTTCGTGGAGGAAATAGCATGCGGAGCAAATCATGTTGCTGCATTGACTTCAAGAAGTGAACTATATACTTGGGGTAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGATGACCAGAAAACTCCAACCTTGGTAGAAGCCTTGAAAGACAGGCATGTTAGGAATATCGCATGTGGCTCTACCTTTACATGTTGTATATGCTTACATAAATGGCTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACCCGGAAAAGGCATAATTGCTATAATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTCTAGAGCAGCATTGGCTCCGACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTGCTGATAGTGTTTCAAACTTAAATAAAGAAATTAGTCGTCCTTCCTCGTATGGAAGGGAAAAATTTGAGCGGGGAGAGGTGAAGTCTTCCAGAATTCTCTTGCCTCCCATCACAGAACCCATAAAGTACCTTGAGATTAGGACTACTAAGCATGGAAATATAGATGAGACTTCTTCCATGGTCCGAGCAGCTCAAGTTCCTATATCTTTGCAATTGAAAGATGTCGCATTTCCAATTTCGCTGAGTTCTGCACAGAATTTTTTCAAGCCTCTTATTCAGTCAAGTCATACTCAACCTCCACCTCCACCAATGAGACCTATGTCACCATATGCTAAAAGAAGACCACCAAGCCCACCTCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAAAAAGAAAAGCGATCATATGACTCAAGAAGTCTCAAAATTGCAAAACAAAAATAAAAGTTTGAAGCAGAAGAGTGAAACACAAGCAATGAAGATTCAGGAGCTTCAGAAAGTTATTGAAGAGGAATCTTCTAAGTTTAGGGAAGCAAAGGATTTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTGATTGAGACTTTGCAATCTGAGATTCCTGAGAATGAGACTTTGAGAACCATGCATGCTCAAGCTGAAGAGTTTCTTAATAAAGAAAAACGTTTGAAACTGAGCCTCAAGTCTCAGCCACAAAGTGCACCTGATGTATCTGCCTCGGATAGTAACTCTCAGGAGCTGAAAGAGCGAAATGATGATACTTCCGGGGTTGTTCCATCCCCAGACGGAGAAAATACTTTTGAAGAAACCAGCAACTCATCTACATCTAATACAGCAGCGAGTCCACCAAACTCAAGAAATATTTCAAGATTAAGGGACTCCAATGTACATTTGACAGAAGGAGAAAGATCAATCATTGAACAATTTGAGTCAGGTGTTTATGTCACCCTCGTTGTACTACCTAATGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCAGCAAGCAGAAGAATGGTGGAACCAAAACAAAGATAAGGTGTACAGTAAATACATTCCACCACCACCCACAAAAAATGAAATTACTGGACCATCTGTTACCTCTACAAATGCTGAAGAGAATAGTGAGGCGTTACCTTCTTCCTGA 3081 0.4138 MADLSIFGSSERLEQDETKLIWISHGKEKNLKLAAVSHIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEIWFSCLKALISSGDRIKRGISDLSNDCVDFVAGTLEFASSISRSRFSFESASHESTSSWSRSDTNMAQRTSIGDGSRVSISSISHSSSVGSGIDDIESLGDVFIWGEVWGDGNSSDGLGSQASGKIDVLTPKALESNVVLDVNQIGPGVRHIALVTRQGELFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNMSLVACGEYHSCAVSVSGDLFTWGDATNSAGLLGHGSDVSYCIPKRVSGALDGHQVVSVACGAWHSALATTLGKLFTFGDGKFGVLGHGDRECVSYPKQVQLLSGQKAIKVACGVWHSAAIIEIMDPSGSNPSSKKIFTWGDGDQYRLGHVNKESYLQPTCVAALADYSFNQIACGYTMTVALTVSGHVFTMGGTTYGQLGNPNSDGKVPILVRDKLVGEFVEEIACGANHVAALTSRSELYTWGRGANGRLGHGDTDDQKTPTLVEALKDRHVRNIACGSTFTCCICLHKWLSGVDQSVCSDCRQPFGFTRKRHNCYNCGLVFCHPCSSKKASRAALAPTPSKPHRVCDACYAKLKGADSVSNLNKEISRPSSYGREKFERGEVKSSRILLPPITEPIKYLEIRTTKHGNIDETSSMVRAAQVPISLQLKDVAFPISLSSAQNFFKPLIQSSHTQPPPPPMRPMSPYAKRRPPSPPRSTSPGFSRSLIDNLKKKSDHMTQEVSKLQNKNKSLKQKSETQAMKIQELQKVIEEESSKFREAKDFIKSMTDKLREVIETLQSEIPENETLRTMHAQAEEFLNKEKRLKLSLKSQPQSAPDVSASDSNSQELKERNDDTSGVVPSPDGENTFEETSNSSTSNTAASPPNSRNISRLRDSNVHLTEGERSIIEQFESGVYVTLVVLPNGYKVFKRIRFSKRRFNEQQAEEWWNQNKDKVYSKYIPPPPTKNEITGPSVTSTNAEENSEALPSS 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00106 1026 Gene3D - 403 570 IPR009091 -
Vimu3g00106 1026 Gene3D - 119 402 IPR009091 -
Vimu3g00106 1026 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 400 IPR000408 -
Vimu3g00106 1026 CDD FYVE_like_SF 577 629 - -
Vimu3g00106 1026 Pfam Regulator of chromosome condensation (RCC1) repeat 462 511 IPR000408 -
Vimu3g00106 1026 Pfam Regulator of chromosome condensation (RCC1) repeat 242 290 IPR000408 -
Vimu3g00106 1026 Pfam Regulator of chromosome condensation (RCC1) repeat 349 397 IPR000408 -
Vimu3g00106 1026 Pfam Regulator of chromosome condensation (RCC1) repeat 293 344 IPR000408 -
Vimu3g00106 1026 Pfam Regulator of chromosome condensation (RCC1) repeat 413 459 IPR000408 -
Vimu3g00106 1026 Pfam Regulator of chromosome condensation (RCC1) repeat 516 563 IPR000408 -
Vimu3g00106 1026 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 387 397 IPR000408 -
Vimu3g00106 1026 MobiDBLite consensus disorder prediction 726 762 - -
Vimu3g00106 1026 ProSiteProfiles BRX domain profile. 942 997 IPR013591 -
Vimu3g00106 1026 MobiDBLite consensus disorder prediction 1006 1026 - -
Vimu3g00106 1026 MobiDBLite consensus disorder prediction 897 931 - -
Vimu3g00106 1026 Coils Coil 765 792 - -
Vimu3g00106 1026 FunFam PH, RCC1 and FYVE domains-containing protein 1 154 402 - -
Vimu3g00106 1026 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 293 IPR000408 -
Vimu3g00106 1026 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 463 514 IPR000408 -
Vimu3g00106 1026 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 822 - -
Vimu3g00106 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 643 IPR013083 -
Vimu3g00106 1026 Pfam FYVE zinc finger 567 632 IPR000306 GO:0046872
Vimu3g00106 1026 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 571 633 IPR017455 -
Vimu3g00106 1026 SUPERFAMILY PH domain-like 13 93 - -
Vimu3g00106 1026 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 411 462 IPR000408 -
Vimu3g00106 1026 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 515 566 IPR000408 -
Vimu3g00106 1026 MobiDBLite consensus disorder prediction 988 1026 - -
Vimu3g00106 1026 SUPERFAMILY RCC1/BLIP-II 183 568 IPR009091 -
Vimu3g00106 1026 SUPERFAMILY FYVE/PHD zinc finger 567 639 IPR011011 -
Vimu3g00106 1026 MobiDBLite consensus disorder prediction 866 881 - -
Vimu3g00106 1026 Pfam Transcription factor regulating root and shoot growth via Pin3 942 996 IPR013591 -
Vimu3g00106 1026 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Vimu3g00106 1026 PRINTS Chromosome condensation regulator RCC1 signature 510 531 IPR000408 -
Vimu3g00106 1026 PRINTS Chromosome condensation regulator RCC1 signature 244 260 IPR000408 -
Vimu3g00106 1026 PRINTS Chromosome condensation regulator RCC1 signature 452 470 IPR000408 -
Vimu3g00106 1026 PRINTS Chromosome condensation regulator RCC1 signature 351 365 IPR000408 -
Vimu3g00106 1026 PRINTS Chromosome condensation regulator RCC1 signature 294 310 IPR000408 -
Vimu3g00106 1026 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 348 IPR000408 -
Vimu3g00106 1026 Gene3D - 10 101 IPR011993 -
Vimu3g00106 1026 MobiDBLite consensus disorder prediction 865 932 - -
Vimu3g00106 1026 MobiDBLite consensus disorder prediction 729 756 - -
Vimu3g00106 1026 SMART fyve_4 566 634 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00106 Vimu-Chr3 809989 815471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00106 909 997 Major Intrinsic Protein MIP AT1G31880 32.979 4.33e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00106 - - gmx:100778984 1515.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00106 3 809989 815471 Vimu3g00106 3 809989 815471 ECH