Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00100 ATGGCTCCGAAAAGAGTACCAGCGAAGAAGAAGCTACCGACTATTCAGGAGAAGGTTTCGAACCCGTTGTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGGGCGTTGCCTCCAAAGCGGGACCTGACTCGGTTCGTAAAATGGCCGAAGACCGTTCAAATCCAACGCAAGAAACGCATTCTCAAGCAGAGGCTCAAGGTCCCTCCCGCACTCAATCAGTTTACCAAAACCCTCGACAAGAATCTTGGTATAAGTTTGACTGAAACGCTAGGGCATGCTTGTGGGGAGGCTATTATTTATGGGAGATTAGAAGCTGTATGCTTGGAACTTGGCTCAGCAACGAACCTATTCAAGATGCTACTGAAGTACAGGCCAGAAGACAAAGCAGAGAAGAAAGAGCGTTTGTTGAAGAGGGCTCAGGCCGAGGCTGATGGGAAAAGTCTTGAAGGCAAGAAGCCTATTGTTGTTAAATATGGTCTCAATCATGTTACTTACCTTATTGAGCAGAATAAAGCGCAACTTGTTGTGATTGCTCATGATGTGGACCCAATCGAACTTGTGGTCTGGCTTCCGGCACTCTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGCTTGGGAACGGTTGTCCACAAGAAAACGGCTTCAGTTTTGTGCTTGACAACTGTCAAGAACGAAGATAAATTGGAGTTCAGTAGAATCCTAGAAGCTATTAAGGCTAACTTCAATGACAAGTATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGTTCCAAATCCCAAGCCAAGACCAGGGCCAAGGAGAAGCTCCTTGCAAAAGAAGCAGCCCAAAGAATGTCCTAG 864 0.4711 MAPKRVPAKKKLPTIQEKVSNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLGISLTETLGHACGEAIIYGRLEAVCLELGSATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKSLEGKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00100 287 ProSitePatterns Ribosomal protein L7Ae signature. 195 212 IPR004037 GO:0042254|GO:1990904
Vimu3g00100 287 FunFam 60S ribosomal protein L7a 106 262 - -
Vimu3g00100 287 Gene3D - 49 98 IPR029064 -
Vimu3g00100 287 PRINTS Ribosomal protein L7A/RS6 family signature 176 189 IPR018492 -
Vimu3g00100 287 PRINTS Ribosomal protein L7A/RS6 family signature 192 202 IPR018492 -
Vimu3g00100 287 PRINTS Ribosomal protein L7A/RS6 family signature 202 216 IPR018492 -
Vimu3g00100 287 PRINTS Ribosomal protein L7A/RS6 family signature 157 171 IPR018492 -
Vimu3g00100 287 Gene3D - 107 281 IPR029064 -
Vimu3g00100 287 SUPERFAMILY L30e-like 114 248 IPR029064 -
Vimu3g00100 287 Coils Coil 130 150 - -
Vimu3g00100 287 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 41 263 - -
Vimu3g00100 287 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 152 234 IPR004038 -
Vimu3g00100 287 PRINTS Ribosomal protein L7A family signature 45 62 IPR001921 -
Vimu3g00100 287 PRINTS Ribosomal protein L7A family signature 28 45 IPR001921 -
Vimu3g00100 287 PRINTS Ribosomal protein L7A family signature 65 84 IPR001921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00100 Vimu-Chr3 783847 787444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00100 1 287 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 74.564 5.29e-155 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00100 K02936 - gmx:100797399 443.736