Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00095 ATGGAAACTACAAGGCGGTGGTTTAGTAAGTTCAAGGGAAATGATAAAATGAAGTCTGCAAAAGAAACTACAGGCGTGACCAAAGAAGGGCCAAAGCCCCCAACAAATGAAGAGCCACCTTCAAATGTAACCAAACAGAAGGTTGAAGCTGCAAAGCAGTACATAGAAAATCATTACAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGGAATATGCTAGAAAAGAAGTTGGCAGATGCCGAAGTGTCTGAGGAAGAGCAGCACAACTTACTTCAGTATTTGGAGAAAAAGGAGAGGGAGTACATGCGGCTTCAGAGACATAAGATGGGGGCTGATGACTTTGATCCGCTGACTATGATTGGAAAGGGTGCATTTGGAGAGAGCGAGCTAACTTGCAGTTGCAGCCAGGTCAGACTGCTTCTGGATTGTGATCTTGACCATGTTAGAGTCTGCCGGGAGAAGGCTACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTCGTGGTCAGGTTGAACATGTCAAAGCTGAGAGAAACCTGCTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAATATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTGACAGAAGATGAAGCTAGATTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAGCATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGTTAGATAGAAATGGTCACATGAAGTTATCAGATTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAAGAAAAGGACTTTTCTGTTGGAACTAACCGAAGTGGAGCCCTCCAAAGCGATGGACGTCCAGTGGCTCCTAAACGAAGTCAACAGGAACAACTGCAGCATTGGCAGAAGAATCGACGAATGCTTGCCAACAACACCTGGAAGCTCAGTGAATTTGGGACTCCTCTTCGTAGGAGTAGGAGGCTCAACAAGGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTGCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTACCCACCCTTTTACTCAGATGAACCAATGTTGACTTGTAGAAAGGTAACATGCAGGAGCACTCTTAATGGATTCCATTCCAGTTCATCATGCATTTTGTATGAATTGGATTACGCCATGTATGATTTTGAGTCCATTGTGTTCTGCAAGATAGTAAATTGGAGAACTAATTTGAAATTTCCAGAAGAAGCTAAACTTTCAGTAGAGGCAAAAGATCTTATTTGTAGACTCCTGTGTAATGTAGAGCAGAGGCTTGGAACCAAAGGAGCCTATGAAATAAAGGCCCATCCATGGTTCAAAGGCATCGAATGGGACAAACTGTACAAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAACTTTGAGAAGTTTGAAGAGGTAGACAAACAAACTGTAGCTTGCTCAAAAGCAGGGCCCTGGAGAAAGGTTTATGAGGAGTGTGCTCTGCCAACTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGGCCCTATTTGTTGCTGTTACTTTGTCACTATATCTTCTGGTTTGGCTTGACAGATTCTCTAATAAATTAGTTTTATTGTGTGATACAGAGGATGAATCAGCTGTGGCTGCGAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGA 1887 0.4176 METTRRWFSKFKGNDKMKSAKETTGVTKEGPKPPTNEEPPSNVTKQKVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQYLEKKEREYMRLQRHKMGADDFDPLTMIGKGAFGESELTCSCSQVRLLLDCDLDHVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGTNRSGALQSDGRPVAPKRSQQEQLQHWQKNRRMLANNTWKLSEFGTPLRRSRRLNKAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKVTCRSTLNGFHSSSSCILYELDYAMYDFESIVFCKIVNWRTNLKFPEEAKLSVEAKDLICRLLCNVEQRLGTKGAYEIKAHPWFKGIEWDKLYKMKAAFIPEVNDELDTQNFEKFEEVDKQTVACSKAGPWRKVYEECALPTELKKKSTKPKRPSIKALFVAVTLSLYLLVWLDRFSNKLVLLCDTEDESAVAANQPVRGSFLNLLPPQMEVPEKSESQ 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00095 628 SMART serkin_6 117 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00095 628 SUPERFAMILY Protein kinase-like (PK-like) 115 525 IPR011009 -
Vimu3g00095 628 CDD MobB_NDR_LATS-like 51 112 - -
Vimu3g00095 628 ProSiteProfiles Protein kinase domain profile. 117 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00095 628 Pfam Protein kinase domain 334 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00095 628 Pfam Protein kinase domain 151 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00095 628 CDD STKc_NDR_like 115 544 - -
Vimu3g00095 628 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 529 - -
Vimu3g00095 628 FunFam Non-specific serine/threonine protein kinase 221 288 - -
Vimu3g00095 628 Gene3D Transferase(Phosphotransferase) domain 1 436 511 - -
Vimu3g00095 628 Gene3D Transferase(Phosphotransferase) domain 1 334 411 - -
Vimu3g00095 628 Gene3D Phosphorylase Kinase; domain 1 512 525 - -
Vimu3g00095 628 Gene3D Phosphorylase Kinase; domain 1 43 140 - -
Vimu3g00095 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Vimu3g00095 628 ProSiteProfiles AGC-kinase C-terminal domain profile. 494 584 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu3g00095 628 Gene3D Phosphorylase Kinase; domain 1 150 219 - -
Vimu3g00095 628 Gene3D Transferase(Phosphotransferase) domain 1 220 293 - -
Vimu3g00095 628 Coils Coil 59 86 - -
Vimu3g00095 628 Coils Coil 315 335 - -
Vimu3g00095 628 MobiDBLite consensus disorder prediction 1 45 - -
Vimu3g00095 628 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00095 Vimu-Chr3 744505 754702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00095 1 626 AGC Kinase Gene Family AT3G23310 65.284 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vimu3g00095 Pkinase 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00095 K08790 - gmx:100795087 938.717