Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00057 ATGGGGAGGACAGGAAAATGGCTCAGGAACTTGTTGACAGGGAAGAGAGACAGAGAAAAAGAGAAGGAAAAATGTAGTACAAACCTGTGTCTGTTAAATGGAACAACAGAGAATCCAACAACTCCTGCTTCTTCAACAACAACAACAACAACCACCACCAAGGAGAAAAGAAGGTGGAGTTTCAGGAGATCATCAGCTTCCAGGGAACTGAATCTTGCAGAATCTGGTGTCACTGCCTCTGTGACACTGCAAACTACCACCACAGATGCTGAGAATGATCAAAGGAAACATGACACTGTGCTGGCTCTGGTGCCTGCTGATGCTGCTATCATCTGCTTGACTCCTGATTCCCATATATCGTCAACAAGTATTGAAGAGGCTGCAGCCATTAAAATTCAGTCAGTTTTTCGGTCCTACTTGGCAAGAAAGGCACTGTGTGCTCTTAGAGGACTGGTGAAGTTGCAGGCACTGGTGAGGGGTCATTTGGTGAGAAAACAGGCCAGGGAGACACTAAGATGCATGCAGGCTTTGGTCGTAGCACAAGCCAGGGCTCGTGCTCAGAGGGCAAGGATCGTGTCAGAAGGAAAAGTTGATCAAAACCTTTCACCCTACAGAATGACCCCAGAGGACAACTTCTTCATGCACATGTATAATGAAATGGAAAGTGGTTTGGAATTGGAAGAGAATGCCAAGATTGTTGAGATGGCTGTTTGCGAATCCAAAGCTAACTCCAGAGGCAGAAAAAGCTCTGCAAATCGAGAACTTTCTGATCACAGATTTTCTACATATTACTCACCAAATGGTTCATACTCAAAGGAGGAAAACTATAATGCATCACCTGCACCATCAACACTGACAGAATTGAGTCCGAGAGCATACAGTGGTCATTTTGAGGATTGCTCCTTCAGCACAGCACAAAGTAGTCCCTATTACAACAACACAAAGCTACCTTTTTCCTTCCCTAAACCAGCCTACACAGAAGCCATGTCCTATGACTACCCTTTGTTTCCAAACTACATGGCCAACACAGAATCATCAAGGGCCAAAGCCAGATCACAGAGTGCACCAAAAGCAAGGCCAGATTCTGTTGAGAGGCAGCCAAGCCGAAGAAGGGCTTCAATGGAAGGGAGAAATGTCCCAAAGCCAGTCAGGATGCAGAGGTCATCTTCTCATGTTGGTGTCACTGCTCAAAACTACCAATATCCTTGGTCAATAAAGCTTGACAGGTCCATAGTCAGTGAGTGTGGCTCTACAAGCACAGTGCTCACAAACTCTAATTACTACTGCACATGA 1293 0.4548 MGRTGKWLRNLLTGKRDREKEKEKCSTNLCLLNGTTENPTTPASSTTTTTTTTKEKRRWSFRRSSASRELNLAESGVTASVTLQTTTTDAENDQRKHDTVLALVPADAAIICLTPDSHISSTSIEEAAAIKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQARETLRCMQALVVAQARARAQRARIVSEGKVDQNLSPYRMTPEDNFFMHMYNEMESGLELEENAKIVEMAVCESKANSRGRKSSANRELSDHRFSTYYSPNGSYSKEENYNASPAPSTLTELSPRAYSGHFEDCSFSTAQSSPYYNNTKLPFSFPKPAYTEAMSYDYPLFPNYMANTESSRAKARSQSAPKARPDSVERQPSRRRASMEGRNVPKPVRMQRSSSHVGVTAQNYQYPWSIKLDRSIVSECGSTSTVLTNSNYYCT 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00057 430 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Vimu3g00057 430 MobiDBLite consensus disorder prediction 32 54 - -
Vimu3g00057 430 PANTHER IQ-DOMAIN 5-RELATED 1 376 - -
Vimu3g00057 430 MobiDBLite consensus disorder prediction 32 60 - -
Vimu3g00057 430 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Vimu3g00057 430 Pfam IQ calmodulin-binding motif 152 168 IPR000048 GO:0005515
Vimu3g00057 430 Pfam IQ calmodulin-binding motif 127 145 IPR000048 GO:0005515
Vimu3g00057 430 Pfam Protein of unknown function (DUF4005) 308 378 IPR025064 -
Vimu3g00057 430 Gene3D - 123 172 - -
Vimu3g00057 430 SMART iq_5 124 146 IPR000048 GO:0005515
Vimu3g00057 430 SMART iq_5 147 168 IPR000048 GO:0005515
Vimu3g00057 430 MobiDBLite consensus disorder prediction 344 391 - -
Vimu3g00057 430 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00057 Vimu-Chr3 440712 442499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00057 1 427 IQD Protein Family AT4G14750 46.696 3.73e-97 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00057 - - pvu:PHAVU_007G277500g 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00057 3 440712 442499 Vimu3g00057 3 440712 442499 ECH