Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00053 ATGTCTTCGTCCTCACTGGAGCATAAAAGTAATGAGAATGAGGGAAATAATCTAAGGAAAGGGCAATGGACAGAAGAAGAAGATGCAATACTGGCAGCATACGTGACACAACATGGACCAGGAAATTGGAACATAGTGAAGCAAAGGACTGGACTACTTCGTTGTGGGAAAAGTTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATCTGAGGAGAGGTGCATTCACCAAAGAAGAACAAAACAAAGTCATTGAGTTACATGCGAAGATGGGAAATAAATGGGCCAAAATGACACAGGACTTGCCTGGACGAACAGACAATGAAATCAAGAACTTCTGGAATACTAGATTAAAGAAAAGGAAACGAATTGGCTTAGGAGTCTACCCAGATGGCATACAACCTGTGCATGATGCTCACAACCCAGAAACCAGTCTAATTACCTACACTCATCGTGACTCAGAAGTAGTAGGTACATCATCTGAACATGCGATGCTCACTCAAAATCAACCACTCCTTGTACCACCAATTTCTATTGTACGTGAAAACATGAATCTCTCTGTGAAACCTGAAGAAAAGCAAATGTATGATGTACAACTACCTGAAGCATGTACATCATCTTGTGTGTTCAACAATTCTAATAACTCTCAAAATCAACCACTCTATGCACAACCAATTTTTCAGGAACTTCATGATTTGTAA 702 0.4003 MSSSSLEHKSNENEGNNLRKGQWTEEEDAILAAYVTQHGPGNWNIVKQRTGLLRCGKSCRLRWTNHLRPDLRRGAFTKEEQNKVIELHAKMGNKWAKMTQDLPGRTDNEIKNFWNTRLKKRKRIGLGVYPDGIQPVHDAHNPETSLITYTHRDSEVVGTSSEHAMLTQNQPLLVPPISIVRENMNLSVKPEEKQMYDVQLPEACTSSCVFNNSNNSQNQPLYAQPIFQELHDL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00053 233 SMART sant 19 69 IPR001005 -
Vimu3g00053 233 SMART sant 72 120 IPR001005 -
Vimu3g00053 233 Gene3D - 75 121 - -
Vimu3g00053 233 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g00053 233 SUPERFAMILY Homeodomain-like 17 114 IPR009057 -
Vimu3g00053 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vimu3g00053 233 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Vimu3g00053 233 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vimu3g00053 233 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vimu3g00053 233 CDD SANT 75 118 IPR001005 -
Vimu3g00053 233 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 216 - -
Vimu3g00053 233 FunFam MYB-related transcription factor 19 72 - -
Vimu3g00053 233 Gene3D - 20 72 - -
Vimu3g00053 233 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vimu3g00053 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vimu3g00053 233 CDD SANT 23 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00053 Vimu-Chr3 412107 412928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00053 17 134 MYB Transcription Factor Family AT2G26960 66.102 1.63e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g00053 Myb_DNA-binding 6.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00053 K09422 - vra:106763259 318.546