Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00049 ATGAATCGTATCGATGATGGTCCTGTGATTGTGAAGGAGGAGTTTCCTGGTGAAGGGTTGGTTGCTCCACAGCCGCTTGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAGACTTATGACATAGTTGATGATGTTTCCACTGATGAGATAGTTTCATGGAGCAGAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTTTCCATCTCTCTTCTCCCCAAATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAGCTCAACACCTATGGGTTTAGAAAGGTGGATCCTGACAAATGGGAGTTTGCTAATGAAGGTTTTCTTAGAGGACAAAGGCATCTATTGAAGATCATAAGGAGGAGGAAGAGCAGTCATCAACCTCAGGCAGCACAACAATCTATGGAGCATTGTGTTGAAGTGGGGAGGTTTGGATTAGATGGAGAAATCGATGGATTGAGACGTGACAAGCAAGTTCTGATGATGGAACTGGTGAAACTTAGACAGCAACAGCAGAACACAAAAAACCACCTTCAATCAATGGAAAGTAGGCTCAAAAAGACTGAACAGAAACAGCAGCAGATGATGAAGTTCTTGGCAAGGGCAATGCAGAACCCCAACTTCTTGCAACAATTGGTTCAAGAAAGGGAGTGGAGGAAGGAGCTGGAGGAAGCTATTTCCAACAAGAGAAGAAGGCCTATTGATGAAGGGCCTTGTGATGCTGAAGAATGTTCAGTTTTGGTTAAACTTGAACAGGAGGAGTACAATGAGATTTCAGAGCTTGAGGTTTCTGACATAGAGCTTGCTATGAAAATGGAGGAACAAAGTGGAAGCCAAGAGAACACTTATGGTGAAGAAGAGAAAGGAGGTGAAGATGAAAGTAGAAATGAAGGCATTGAAGAAGTACTGTGGGAAGAACTTCTGAATGAGGGTGTTGAAGAAGATCTACTAGCATTGGAAAATGATGATAATGAACATGTAACTTTGTTGTCTGAAGAACTTGGTTATTGA 1023 0.4282 MNRIDDGPVIVKEEFPGEGLVAPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSISLLPKYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQRHLLKIIRRRKSSHQPQAAQQSMEHCVEVGRFGLDGEIDGLRRDKQVLMMELVKLRQQQQNTKNHLQSMESRLKKTEQKQQQMMKFLARAMQNPNFLQQLVQEREWRKELEEAISNKRRRPIDEGPCDAEECSVLVKLEQEEYNEISELEVSDIELAMKMEEQSGSQENTYGEEEKGGEDESRNEGIEEVLWEELLNEGVEEDLLALENDDNEHVTLLSEELGY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00049 340 ProSitePatterns HSF-type DNA-binding domain signature. 76 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00049 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 262 IPR027725 -
Vimu3g00049 340 SMART hsfneu3 33 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00049 340 SUPERFAMILY "Winged helix" DNA-binding domain 32 126 IPR036390 -
Vimu3g00049 340 MobiDBLite consensus disorder prediction 288 303 - -
Vimu3g00049 340 MobiDBLite consensus disorder prediction 278 303 - -
Vimu3g00049 340 FunFam Heat shock transcription factor 1 30 127 - -
Vimu3g00049 340 Gene3D - 29 127 IPR036388 -
Vimu3g00049 340 Coils Coil 154 195 - -
Vimu3g00049 340 Pfam HSF-type DNA-binding 37 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00049 340 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00049 340 PRINTS Heat shock factor (HSF) domain signature 37 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00049 340 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00049 Vimu-Chr3 370972 372491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00049 20 340 HSF AT3G22830 56.233 5.99e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu3g00049 HSF_DNA-bind 4.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00049 K09419 - gmx:100806789 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00049 3 370972 372491 Vimu3g00049 3 370972 372491 ECH