Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00045 ATGCCTGTGAGACAGATGAGGGAGAGCTCAGAGCAACATCTTGTTATCAAGCCCCATTTGCAGAACCCCATGAATGGAGCTAAGAAGGTTCCTAGAGCTGTTCAAAATGGCAAAGGTCCACCACCACCACTGCCACAAGAACCCCACAACCAAACTTCATCTCATGCTAGGAACAAGGGGAGAAGAAGGGGCAGGGGTGGCAGAAAATGTGACCAAGGCGATGTTTTGATGAGACCTATTGTGACAAGTGGTGTTGAAAATGGAAGCACCATGTGCGGTGAAATAGAGATGGGATACCCTACATCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGCTTTGGACAAGTTGGAACAAAGTGCATTGTGAAGGGTAACCATTTCTTTGCCGAGTTACCAGACAAGGACTTAAACCAGTATGATGTCAGTATCACCCCTGAAGTCTCTTCCAAAGCTGTGAACAGGTCCATAATAGCAGAACTCGTGAGGCTGTATAAAGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGCAGAAAAAGTCTGTACACAGCAGGGCCACTTCCCTTTTCCTGGAGAGAGTTTAAGATAAAGGTTGTGGATGATGAGGATGGAGTCAATGGCCCCAATTCAATTCCCAAACCAGCTGACACTTGCCCCATTTTCAGAAGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCTAGGGCGAATTTGCATCACTTGGGACAGTTTCTGGCTGGTAAACGTGCTGATGCTCCACAAGAGGCACTCCAAATTCTTGACATTGTATTAAGAGAGCTATCATCTAAGAGGTTCTGTCCAATTGGGAGATCATTCTTTTCACCGGATATTAGAACACCCCAACGGCTTGGGGAAGGTTTGGAGTCTTGGTGTGGATTCTACCAAAGCATAAGGCCCACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGTCAAGGCAATTGTCTGACGCTGATCGCATCAAAATTAAGAAAGCTCTTAGAGGAGTTAAAGTTGAAGTAACCCACAGAGGGAGTGTTAGAAGAAAGTACCGAGTTTCTGGTTTGACTTCTCAACCGACCAGAGAACTCGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCTGTAGTTGAATATTTTCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTTGGAAATCAAAAGAAAGCAAATTATTTGCCAATGGAGGCCTGCAAAATTGTTGAGGGACAACGCTACACGAAAAGGTTGAATGAGAAGCAAATCACTGCTCTCCTGAAAGTTACTTGTCAAAGACCCCGTGATCGTGAAAGTGACATTTTGCGGACCATTCAGCACAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAATAAGTGAGAAGCTAGCTTCGGTAGAAGCGAGAATTCTTCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTGCCCCAAGTTGGTCAATGGAATATGATGAACAAGAAAATGATAAATGGGATGACTGTCAGCCGGTGGGCATGCATAAATTTTTCACGAAGTGTACAAGACACTGTTGCTCTCTCTTTTTGTACCGAACTAGCTCAAATGTGCCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAACCTGAGCATGTGGAGAAAGCTTTAAAGCATGTTTATCATGTGTCATCAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTATTAGCAATATTACCTGACAACAACGGTTCTCTCTACGGTGATCTAAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACGAAGCATGTCTTCAAGATCACTAAGCAGTACCTGGCTAATGTGTCTTTGAAAATCAATGTCAAGATGGGAGGTAGAAACACTGTTTTGGTTGATGCTGTAAGTTGTAGAATACCATTGGTTAGTGACATACCGACTATAATATTTGGAGCAGATGTTACTCACCCCGAAAATGGGGAAGACTCCAGCCCTTCAATTGCAGCTGTAGTAGCATCTCAAGACTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGTGCTCAGGCTCATAGGCAGGAACTTATACAAGACTTGTACAAAATGTGGCATGACCCTGTTCGTGGCTTAGTTAGTGGTGGCATGATCCGAGATTTGTTGATTTCCTTTAGAAAGGCAACAGGACAAAAGCCTCTAAGGATTATATTTTATAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTCTACTCTACGAGTTGGATGCAATTCGGAAGGCATGTGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAACAACCACAGGGACAGAAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTGGATTCTAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCCGGTATCCAGGGTACAAGTCGTCCTGCTCATTATCATGTGCTTTGGGACGAAAACAACTTTACAGCAGATGGAATCCAATCTTTGACAAACAATCTATGTTATACATATGCTCGGTGTACACGCTCAGTGTCTGTTGTTCCTCCTGCATATTACGCGCACTTAGCTGCATTTCGAGCACGGTTCTACATGGAACCAGACATGCAAGAAAATGGGTCCTCAGGAGGAGGTGGTGGTGGTTCGAAGGCTACAAAAGGAGGTGGTGGAGAGTGCGGCGTGGTGAAGCCGTTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2955 0.4311 MPVRQMRESSEQHLVIKPHLQNPMNGAKKVPRAVQNGKGPPPPLPQEPHNQTSSHARNKGRRRGRGGRKCDQGDVLMRPIVTSGVENGSTMCGEIEMGYPTSSKSLSFAPRPGFGQVGTKCIVKGNHFFAELPDKDLNQYDVSITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGPLPFSWREFKIKVVDDEDGVNGPNSIPKPADTCPIFRREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGKDILSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRESDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDTVALSFCTELAQMCQVSGMEFNPEPVIPIYNAKPEHVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKMWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSSGGGGGGSKATKGGGGECGVVKPLPALKENVKRVMFYC 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00045 984 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 101 938 - -
Vimu3g00045 984 ProSiteProfiles PAZ domain profile. 329 443 IPR003100 GO:0005515
Vimu3g00045 984 Pfam N-terminal domain of argonaute 120 267 IPR032474 -
Vimu3g00045 984 SMART DUF1785_2 276 328 IPR014811 -
Vimu3g00045 984 SUPERFAMILY Ribonuclease H-like 609 939 IPR012337 -
Vimu3g00045 984 FunFam Argonaute 10 507 680 - -
Vimu3g00045 984 CDD Piwi_ago-like 487 937 IPR045246 -
Vimu3g00045 984 Gene3D - 507 680 - -
Vimu3g00045 984 SMART PAZ_2_a_3 333 465 IPR003100 GO:0005515
Vimu3g00045 984 Pfam PAZ domain 355 459 IPR003100 GO:0005515
Vimu3g00045 984 SUPERFAMILY PAZ domain 323 483 IPR036085 GO:0005515
Vimu3g00045 984 SMART Piwi_a_2 617 938 IPR003165 GO:0003676
Vimu3g00045 984 Pfam Argonaute linker 2 domain 469 515 IPR032472 -
Vimu3g00045 984 Pfam Piwi domain 618 937 IPR003165 GO:0003676
Vimu3g00045 984 CDD PAZ_argonaute_like 328 442 - -
Vimu3g00045 984 Pfam Argonaute linker 1 domain 277 326 IPR014811 -
Vimu3g00045 984 Gene3D - 686 984 IPR036397 GO:0003676
Vimu3g00045 984 FunFam protein argonaute 10-like 686 984 - -
Vimu3g00045 984 ProSiteProfiles Piwi domain profile. 617 938 IPR003165 GO:0003676
Vimu3g00045 984 Pfam Mid domain of argonaute 526 603 IPR032473 -
Vimu3g00045 984 Gene3D paz domain 322 447 - -
Vimu3g00045 984 FunFam Protein argonaute-2 322 448 - -
Vimu3g00045 984 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00045 Vimu-Chr3 329817 335792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00045 1 984 Eukaryotic Initiation Factors Gene Family AT5G43810 79.980 0.0 1635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00045 K11593 - gmx:100819073 1840.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00045 3 329817 335792 Vimu3g00045 3 329817 335792 ECH