Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00032 ATGGAAGCGTCGCCGCCACCACGCACCATCCTCGGTAGGTACCAGCTCACGCGATTCCTTGGCCGCGGCAACTTCGCCAAGGTCTACCAGGCGCGCTCACTCGTCGACGGCGCCACGGTGGCCGTCAAGGCCATCGACAAGTCCAAGACGGTCGACGCCGCCATGGAACCCCGCATTGTGCGCGAGATCGACGCTATGCGCCGTCTCCAGAACCACCCAAACATCCTCAAAATCCACGAGGTTCTCGCCACGAAGACCAAAATTTACCTTGTCGTCGACTACGCCGGCGGCGGCGAGCTCTTCTCCAAGCTCTCCCGGTGTGGCCGCCTCCCGGAGCCCCGAGCCCGGCGCTATTTCTCCCAACTCGTCTCTGCGCTCCTCTTCTGCCACCGCCATGGCATCGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGCCGCCGGCGACCTCAAGGTCTCTGACTTTGGCCTCTCCGCACTCCCGGAACACCTCCGTGATAACCTCCTCCACACCGCATGTGGCACGCCGGCCTTCACTGCGCCGGAGGTCCTACGCCGCGTCGGCTACGATGGTTCCAAGGCCGACGCTTGGTCCTGCGGTGTCATTCTCTACAACCTTCTCGCCGGCCACCTCCCCTTTGACGACTCGAACATTCCTGCCATGTGCCGCCGAATATCCCGCCGCGACTATCAATTCCCGGCGTGGATCTCAAAATCCGCGCGCAGCCTCATCCACCAGTTGCTGGACCCCAATCCTAAATCCCGAATTTCTCTTGAAAGAATTTTCGATAACAGATGGTTAAGGGATAAGAAGCATGTTTGTTATAACGTGTTGGAGGAGAGTGTTGTGGAGTCTGATTTGTATAACAAGTGCTGCGACGGCTACAAGTTGGGGATGAACGCTTTTGACATAATATCAATGTCGTCGGGGTTGGACTTGCGAGGACTGTTCGAAACGACGTCGGAGAAAGGGAGGCGGAGGGAGAAGAGGTTCAGTTCGGAGAAGAGCGTGGGAACGGTGGAGGCGAAGGTGAAGGAGGTTGGGGAGAGGTTAGGGTTTAGGATTGAGGTTGGAAAGAACGGTGCAATTGGGTTAGGAAATGGGAAAGTGGGTTTGGTAGTTGAGGTGTTTGAGATTGTGTCTGACTTGCTCCTTGTTGCTATTAAAGTGGTAGATGGTGCTATAGAGTTTGACCAACTTCATTGGGATGATTGGAAACTTGGCCTTGAAGATGTTGTTCTCTCATGGCATCACAATGAGTAA 1269 0.5634 MEASPPPRTILGRYQLTRFLGRGNFAKVYQARSLVDGATVAVKAIDKSKTVDAAMEPRIVREIDAMRRLQNHPNILKIHEVLATKTKIYLVVDYAGGGELFSKLSRCGRLPEPRARRYFSQLVSALLFCHRHGIAHRDLKPQNLLLDAAGDLKVSDFGLSALPEHLRDNLLHTACGTPAFTAPEVLRRVGYDGSKADAWSCGVILYNLLAGHLPFDDSNIPAMCRRISRRDYQFPAWISKSARSLIHQLLDPNPKSRISLERIFDNRWLRDKKHVCYNVLEESVVESDLYNKCCDGYKLGMNAFDIISMSSGLDLRGLFETTSEKGRRREKRFSSEKSVGTVEAKVKEVGERLGFRIEVGKNGAIGLGNGKVGLVVEVFEIVSDLLLVAIKVVDGAIEFDQLHWDDWKLGLEDVVLSWHHNE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00032 422 SMART serkin_6 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00032 422 Pfam Protein kinase domain 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00032 422 FunFam Non-specific serine/threonine protein kinase 5 295 - -
Vimu3g00032 422 ProSiteProfiles Protein kinase domain profile. 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00032 422 Pfam NAF domain 301 358 IPR004041 GO:0007165
Vimu3g00032 422 CDD CIPK_C 302 411 - -
Vimu3g00032 422 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vimu3g00032 422 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Vimu3g00032 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vimu3g00032 422 FunFam Non-specific serine/threonine protein kinase 7 99 - -
Vimu3g00032 422 Gene3D Kinase associated domain 1, KA1 304 416 - -
Vimu3g00032 422 SUPERFAMILY Protein kinase-like (PK-like) 10 281 IPR011009 -
Vimu3g00032 422 Gene3D Transferase(Phosphotransferase) domain 1 7 303 - -
Vimu3g00032 422 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00032 Vimu-Chr3 231223 232491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00032 3 421 Miscellaneous Gene Families AT3G23000 56.000 2.93e-160 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu3g00032 Pkinase 3.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00032 K12761 - gmx:100305372 717.613