Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00027 ATGGATGACGAAAACCAAGCCACAGAGCAGGAATACGCCTTTCACTCCGACCTGCTCCACCAATTCACCGCCATCCCCTCCGTCGACAAGGCATGGATCTTCAACTCCCGCGCCGGTCAGTTTCATCCACACCAATCCCCTTCGTGTTTCACTTCACTTCCCAGTTTGGCTTCGCAGGCAATGTTTTGCGTTAGTCAACCCAACCTTTTGACCAACAAGGGGAAGAAGTCCATCCTCTCCGCTTCCCTGCTCAGGCAAAGCGACGGCACCGTTGCGTTTCACTGGGCTCCCTTTCCGATCGAATTGAGCGGAGTCTCCGCCATGGTTCCGTCGCCTTCTGCCTCCAAGCTGCTGATTGTTCGGAATCCCGAGAATGAAGGTCCTTGCCGCTTTGAAATTTGGAGCTCCTCTCAACTGGAAAAGGAGTTCCATGTCCCTCAATCTAAGCACGGTTCTGTGTACACTGATGGATGGTTTGAGGGGATCTCTTGGAATTTGAATGAAACTTGTATAGCGTATGCAGCTGAAGAGCCAGCTCCTGCAAAGCCCACATTCAATGATCTAGGTGGCTACCAGAAACTTAGTTCTTCAGACAAGGATGGTGGTACCTGGAAAGCTCAAGGAGAATGGGAGGAAGAATGGGGAGAGACGTATGCAGGGAAGAGGCAGCCTGCCCTTTTTGTCATCGACATAACTAGTGGAGAGGTACAGGCCGTCAAAGGAATTGACAAGTCTTTGAGTGTTGGACAAGTTGTGTGGGCTCCAGCAATCGAAGGCTCTGTGCAATATTTGGTCTTTGTTGGATGGTCATTTAAGACAAGAAAACTTGGTATTAAGTACTGTTATAACAGGCCATGTGCATTATATGCTGTTAAAGCACCACACCATGACTCAAAAGCAAATGAAACTGAGACCTCAACTGAAGATGTTCAGGCTGTTAACCTAACTCAAACCTTAAGTAGTGCTTTCTTTCCACGGTTCAGCCCGGATGGAAAGTTTCTTGTATTTGTATCTGCAAGAAGCTCAGTTGATTCTGGCGCCCACTCTGCTACAGATTCACTTCATAGAATGGATTGGCCTAAGGATATGAAGCTTTATCAATCTTCTAAAATTCATGAAGTGGATGGCAGCTTCCCAGGGCTTTACTGTTCAAATATCCTTAGTGATCCATGGCTTATCGATGGCCAGACCTTAGTTATAGCTTCTGTATGGCACAGCAATCAAGTTTTACTTTCCATCAATGTGCTGAGTGGAGAAATATTGCGAATCACCCCTGATAACTCAAATTTCTCTTGGAGTCTTCTTACATTGGATGGGAACAATATTCTTGCTGTTTCTAGCAGTCCAGTAGACGTTCCTCAAATCAAGTATGGAGCTATTGTTAAAAATACAACTAATGATAAAGAATGGAGTTGGTCAGATGTCTCAAATCCCATATTTAAGTGCTCGGACAAGGTTAGGTCATCGGTCTCGTCTCTTACATCCAGTATAATGAAGATCTCAGTCAAGGATGCTTCTGAAAGCTTAACAAAAGGTGCTAGTCAACCTTATGAAGCTATATTTGTGTCATCAAAAACTAAGAAAAGTGAGGCATGTGATCCACTAATTGTGGTCCTTCATGGGGGACCACATTCTGTCTTATTGTCAAGCTTTTCAAGGCCATTGGCTTATCTTTCTTCAGTTGGATATAGCTTGTTAATTGTTAATTACAGAGGCTCAGTAGGATTTGGCGAGGAAGCCTTGCAATCTCTTCCAGGAAAAGTCGGCTCTCAGGATGTCAACGATGTGCTCACTGCTATTGATCATGTCATTGATTTGGGACTCGCCAGTCCTTCAAAGATTGCAGTTCTTGGTGGCTCACATGGTGGCTTTCTGACAACCCACTTGATTGGCCAGTTGCTGTTAAGCAAAAACTGCTTAGACAGCATAGTGGCTGCTGGTGAGAAAAATTGGTCAGAGGGCATGGCAGTTGCCAGAAAACAATTCTCAGAGGATACAGTGGATACCCTAAAGCATGAATGCTTTGAAAGCATGTCAACTGCTAAGAAGCAACAAGAAAAATGCTCAGAGGGTACAATAATTGCACCTGAGAAATTTGTTGCAGCCGCTGCTAGGAATCCTGTGTGTAACCTTGCACTGATGGTTGGTACAACTGATATCCCTGATTGGTGCTATGTGGAGACCTATGGAACCGAGGGTAGAGACAAGTTTACTGAAGCACCTTCAGCAGCGGATCTAACTCTATTTTATAGCAAATCTCCTATTTCACACCTCTCAAAGGCAAAAACACCAACGCTTTTTCTACTTGGTGCCCAAGATCTCCGTGTTCCAATTTCGACTGGACTACAAGTAAGTATTATTGAGCTTCAACATATAGCTGCAAACTCTGAGTATGCTCGGGCTTTAAGGGAGAAAGGAGTACCAACAAAAGTCATCTTGTTTCCAAATGATGTTCATGGAATTGAAAGGTAA 2472 0.4458 MDDENQATEQEYAFHSDLLHQFTAIPSVDKAWIFNSRAGQFHPHQSPSCFTSLPSLASQAMFCVSQPNLLTNKGKKSILSASLLRQSDGTVAFHWAPFPIELSGVSAMVPSPSASKLLIVRNPENEGPCRFEIWSSSQLEKEFHVPQSKHGSVYTDGWFEGISWNLNETCIAYAAEEPAPAKPTFNDLGGYQKLSSSDKDGGTWKAQGEWEEEWGETYAGKRQPALFVIDITSGEVQAVKGIDKSLSVGQVVWAPAIEGSVQYLVFVGWSFKTRKLGIKYCYNRPCALYAVKAPHHDSKANETETSTEDVQAVNLTQTLSSAFFPRFSPDGKFLVFVSARSSVDSGAHSATDSLHRMDWPKDMKLYQSSKIHEVDGSFPGLYCSNILSDPWLIDGQTLVIASVWHSNQVLLSINVLSGEILRITPDNSNFSWSLLTLDGNNILAVSSSPVDVPQIKYGAIVKNTTNDKEWSWSDVSNPIFKCSDKVRSSVSSLTSSIMKISVKDASESLTKGASQPYEAIFVSSKTKKSEACDPLIVVLHGGPHSVLLSSFSRPLAYLSSVGYSLLIVNYRGSVGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDLGLASPSKIAVLGGSHGGFLTTHLIGQLLLSKNCLDSIVAAGEKNWSEGMAVARKQFSEDTVDTLKHECFESMSTAKKQQEKCSEGTIIAPEKFVAAAARNPVCNLALMVGTTDIPDWCYVETYGTEGRDKFTEAPSAADLTLFYSKSPISHLSKAKTPTLFLLGAQDLRVPISTGLQVSIIELQHIAANSEYARALREKGVPTKVILFPNDVHGIER 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00027 823 Gene3D - 298 508 IPR011042 -
Vimu3g00027 823 ProSitePatterns Prolyl endopeptidase family serine active site. 595 625 IPR002471 GO:0004252|GO:0006508
Vimu3g00027 823 Gene3D alpha/beta hydrolase 511 823 IPR029058 -
Vimu3g00027 823 SUPERFAMILY alpha/beta-Hydrolases 522 821 IPR029058 -
Vimu3g00027 823 Pfam WD40-like Beta Propeller Repeat 315 345 IPR011659 -
Vimu3g00027 823 PANTHER SERINE PEPTIDASE S9 FAMILY MEMBER 5 632 - -
Vimu3g00027 823 SUPERFAMILY DPP6 N-terminal domain-like 101 453 - -
Vimu3g00027 823 Pfam Acylamino-acid-releasing enzyme, N-terminal domain 8 297 IPR045550 -
Vimu3g00027 823 Pfam Prolyl oligopeptidase family 550 631 IPR001375 GO:0006508|GO:0008236
Vimu3g00027 823 Pfam Prolyl oligopeptidase family 695 822 IPR001375 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00027 Vimu-Chr3 195766 206062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00027 534 626 Carbohydrate Esterase AT5G36210 34.409 3.44e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00027 K01303 - gmx:100803600 1074.31