Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00024 ATGACACCCCTCAAACTGCATCACTTCCTCCTTCTCATGTTCATCTTCTTGCTCCCTTCTTCCCACGCTCAAACGCCACGTCAGGCGAACAACACGGGCTTCACGTGCACGGGCACCCGCACCTGCGCCGCCTACGCCTTCTACCGTGCCTCCTCCCCCAACTTCCTGGACCTGGCCGCCGTGGGCGACCTCTTCGAGGTGAGCCGCCAAATGATAGCCACGCCGAGCAACATCTCCTCCGTGTCCTCCGCCTTGGTAGAAGACCAGCCCCTCTTCGTCCCTCTGACCTGCTCCTGCAACCCCGTGAATGCCACCTTCGGGTCCCTCTCCTACGCCAATATCTCCTACGCTATCCAACCCAACGACACCTTCTTCATCGTCTCCACCTACAAGTTCAACAACCTCACCACCTATCCTTCCGTCGAAACCGTCAACCCCACCTTGGTCGCCACCAACCTCTCCATCGGCCAGGTCACCATCTTTCCTGTCTTCTGCAAATGCCCCGACACCAACAACACCAACTATATGATCTCCTACGTTGTGCAACCCGAGGACAATATCTCCTCCATTGCCTCAGCTTTTGGGGTTCAGGAACAGGCTATAATTGACGTCAACAACGACACACTCTATGATTACGACACCATTTTCATCCCTGTGGAGCAGCTTCCGTCTCTGTCGCAGCCTGCGGTGGCTCCGGCTGCGCCCCCTGGTGGGAATGGGAGTGACACTGGGAGTGGGAGTGGCAAGGATAGAACTGGAACTGTTAGAGGGTTGGGGATTGGGTTGGGGGTGGTGGGGATGTTATTGGTGTTGGTGGGTGGGGTGTGGTTGTGGAGAGAGTTTGTGATGAAGAAAAGGTTGGGAGATGAGGAGGAGGAGGGAGGGAGGAAGAAGGTGTATTCGGGCGGGAAAGAGGGACAGAAAGCTGATTTGGATGTGAAACTGATGGCGAATGTGTCGGATTGTTTGGACAAGTACAGGGTTTTTGATGTTGAGGAACTGGTGGAGGCCACGGATGGGTTTGATGGAAAGTCCTTGATTGAGGGATCCGTTTACAAAGGGGAGATTAATGGGGAGCTCTTTGCCATCAAGAAGATGAAATGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTCTGCATAGACCCAGAAGAAGCAAACTGTTATCTAGTCTATGAATATGTGGAGAATGGATCTCTATACTCGTGGTTGCATGAGGAGAGAAAGGAAAAGTTGAACTGGAAAACAAGGCTAAGAATAGCCATTGACATTGCCAACGGCCTCCAATACATCCACGAGCACACAAGGCCACGAGTTGTGCACAAAGACATCAAAAGCAGCAACATTCTGTTGGACTACAACAAGAGAGCCAAAATTGCAAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATCACCATGCACATTGTGGGAACACAGGGCTACATTGCCCCTGAATATCTGGCTGATGGTGTGGTCTCCACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTACTTGAACTAATTTCTGGGAAGGAAGCAATTGATAAGGAGGGAAATCTGTTGTGGGCAAGTGCCATCAGAACCTTTGAAGTGGACAATGAGCAAGAGAAGGCTAGGAGACTGAGGGAATGGATGGATAAGGACATTTTAAGGGAGACATGTTCAATGGAAAGTTTGATGGGTGTTCTCACTGTTGCAATTGCTTGCTTGCAGAAAGACCAGTCAAAGAGGCCAAGCATAATGGACATTGTCTATGCACTGTGTAAAAGTGAAGATTTGGGCTTTGACATCTCAGATGATGGGTTAGGCTCACCACGGGTGGTGGCTAGGTAG 1875 0.5061 MTPLKLHHFLLLMFIFLLPSSHAQTPRQANNTGFTCTGTRTCAAYAFYRASSPNFLDLAAVGDLFEVSRQMIATPSNISSVSSALVEDQPLFVPLTCSCNPVNATFGSLSYANISYAIQPNDTFFIVSTYKFNNLTTYPSVETVNPTLVATNLSIGQVTIFPVFCKCPDTNNTNYMISYVVQPEDNISSIASAFGVQEQAIIDVNNDTLYDYDTIFIPVEQLPSLSQPAVAPAAPPGGNGSDTGSGSGKDRTGTVRGLGIGLGVVGMLLVLVGGVWLWREFVMKKRLGDEEEEGGRKKVYSGGKEGQKADLDVKLMANVSDCLDKYRVFDVEELVEATDGFDGKSLIEGSVYKGEINGELFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEERKEKLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDYNKRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDKEGNLLWASAIRTFEVDNEQEKARRLREWMDKDILRETCSMESLMGVLTVAIACLQKDQSKRPSIMDIVYALCKSEDLGFDISDDGLGSPRVVAR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00024 624 Pfam Protein kinase domain 358 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00024 624 Pfam LysM domain 179 217 IPR018392 -
Vimu3g00024 624 SMART LysM_2 178 218 IPR018392 -
Vimu3g00024 624 Gene3D Phosphorylase Kinase; domain 1 310 406 - -
Vimu3g00024 624 MobiDBLite consensus disorder prediction 227 250 - -
Vimu3g00024 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vimu3g00024 624 CDD LysM 177 217 IPR018392 -
Vimu3g00024 624 ProSiteProfiles LysM domain profile. 177 223 IPR018392 -
Vimu3g00024 624 ProSiteProfiles Protein kinase domain profile. 331 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00024 624 FunFam PTI1-like tyrosine-protein kinase 3 407 606 - -
Vimu3g00024 624 SUPERFAMILY Protein kinase-like (PK-like) 326 601 IPR011009 -
Vimu3g00024 624 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 603 - -
Vimu3g00024 624 SMART serkin_6 341 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00024 624 Gene3D Transferase(Phosphotransferase) domain 1 407 610 - -
Vimu3g00024 624 Gene3D LysM domain 176 218 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00024 Vimu-Chr3 180243 183467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00024 9 603 Receptor kinase-like Gene Family AT2G23770 34.026 2.15e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu3g00024 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00024 - - gmx:100802872 892.878