Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00021 ATGGAAAGCAGAGTTGTATTTGAGAGTGATCTGAACCTCAAGGCAACAGAACTTAGATTAGGGTTGCCAGGGACAGAGGAAAAGGAAGACAACAACCTGCGTACACATGCTGTTCTTAGAAACAACAAAAGACAAGTGCGTGAAACTTCTCAAGACTCCGTTTCCATTTCCAAGGCTTCACATCACCAACAACACGTAGAGACTGTTTCAGCCCCTCCACCCAAATCCTACAGGAAGAACAGTGTGCAGGAGGGTGAGGGGGATGGGATCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAAGTTGACTTGAAAGTCTACGGGGGCTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAAGGGTCTGAATATGCTCCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATCATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGCTCGGAAGCAAGAGGGCTGGGTTGTGTTGTATGAGAAAGAAACAGATGAATTACTATGGCCATGATGAGGAAAATCATTCTTTCAGCTTGGTTTTTGGAACGAAGAGATGTTGA 630 0.4413 MESRVVFESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKASHHQQHVETVSAPPPKSYRKNSVQEGEGDGIFVKVSMDGAPYLRKVDLKVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDHVCDFLQKAKNHERLGSKRAGLCCMRKKQMNYYGHDEENHSFSLVFGTKRC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00021 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 169 IPR003311 GO:0005634|GO:0006355
Vimu3g00021 209 MobiDBLite consensus disorder prediction 44 83 - -
Vimu3g00021 209 SUPERFAMILY CAD & PB1 domains 79 159 - -
Vimu3g00021 209 MobiDBLite consensus disorder prediction 48 77 - -
Vimu3g00021 209 Gene3D - 84 184 - -
Vimu3g00021 209 ProSiteProfiles PB1 domain profile. 89 178 IPR000270 GO:0005515
Vimu3g00021 209 Pfam AUX/IAA family 44 158 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00021 Vimu-Chr3 154932 156216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00021 92 158 B3 DNA Binding Superfamily AT2G46530 41.791 3.06e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vimu3g00021 AUX_IAA 8.7e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00021 K14484 - gmx:100800212 242.662