Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00016 ATGGATTCATTTTTTCCCGAGAAACTTCTGGGTGAGATCTTCTGGGATCAACCGCTTTTGCCCACTGATCAAAATGATCTAGTTCAAAATTCCCAAATCATCAAGGCTGAAGCTTTCCCTCCAGCAACTCAAAGTGCTTTTGTTCAATATAGAGACCTACCCAGAAGAAATAACCCTCTGAACGGGTCAAATTCAGAGGGCATGAGTAAGAGGATGCTTGCGTTCTTGAGAAAAAGTTCCCCTGTGGAGAGAAATAACGTAGAAGAGAATGAAAGAGATCGCAGTTTCAGGCACATGATCAACGAGAGAATGAGAAGACAGAGACAGAGACAATGTTGCTTGGCCCTGCATTCAATTTTACCACACGGAACCAAAACGGATAATAATTCTGTAATTCAAACCGCAGCAAAGGAGATTGTAAGGCTAAAAGGATGCAGAGAAGAGCTGCAGAGGAAAAATTGCGAGGTTGAAGGTGTTTGTGTGAGGAAGAAAGATGAAGGAAGCAAGATTGCATATTTGAGAGTTGCTGATCCCGAGTGTGGAATTGATTCAATGGTTGAGAGGCTGAAGTGGTTGAAAGAGGAAGGAGTGGAGAGCAGGAGGATCAAATCAAGTTTCTCCCCAAAGGAGTTGTTTGCAGTGTTAGAGATAGAGAGTGGTGAGGAGGTATAA 672 0.4301 MDSFFPEKLLGEIFWDQPLLPTDQNDLVQNSQIIKAEAFPPATQSAFVQYRDLPRRNNPLNGSNSEGMSKRMLAFLRKSSPVERNNVEENERDRSFRHMINERMRRQRQRQCCLALHSILPHGTKTDNNSVIQTAAKEIVRLKGCREELQRKNCEVEGVCVRKKDEGSKIAYLRVADPECGIDSMVERLKWLKEEGVESRRIKSSFSPKELFAVLEIESGEEV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00016 223 Gene3D - 83 158 IPR036638 GO:0046983
Vimu3g00016 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 157 IPR036638 GO:0046983
Vimu3g00016 223 Coils Coil 132 152 - -
Vimu3g00016 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Vimu3g00016 223 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 219 IPR044658 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00016 44 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 37.778 2.90e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00016 - - pvu:PHAVU_007G280700g 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00016 3 123626 124551 Vimu3g00016 3 123626 124551 ECH