Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00015 ATGGGATGTGGGGGCATTAGTTCTATTATATATACAAGTGCTGTGGGATGCATCTCCTCCACATCAGTGTTCATTCTCTTTCCCTTTTGTTCCTTCTCCTTTAGAATAATGGACACATCTCTGGTGTTTACGGTGCAGAGACGGGAGCCAGAGCTGATAGCTCCGGCGAAGGCCACTCCTCGAGAAGTGAAGCTACTCTCAGACATAGATGACCAAGATGGGTTAAGGTTTCAGATTCCAGTGATACAGTTCTATCGATATGATCCAGCGCTGGCAGGGAGAGACCCTGTCGGGGTTATCAGAGAGGCTTTGGCCAAAACGCTTGTGTTTTACTATCCCTTTGCAGGTAGGCTGAGGGAAGGAGCCGGTCGGAAACTCATGGTGGACTGCACAGGGGAGGGTGTTTTGTTCATTGAAGCTGATGCAGATGTCACACTCGCTCAATTTGGCCACGCTCTTCAACCTCCTTTCCCCTGCTGGGAGAATCTTCTTTACGATGTTCCTTCCTCTCAAGGAGTTCTTCACACTCCCCTTCTCCTCATCCAGGTAACGCGCCTGAAGTGCGGGGGGTTCATATTCGCGCTCCGTCTGAACCACACCATGAGTGACGCAGCGGGTCTGGTCCAGTTCATGAACGCAGTGGGAGAGATAGCTCGCGGGAGGCAGGAGCCATCGGTCCCACCTGTGTGGCGCAGAGAACTTCTGAACGCGCGGGACCCACCGCGAGTGACGTGCATCCACCGCGAGTATGACGTCGTCCCCGACACGAAAGGCACGATCATCCCCGTGGACGACATGGCCCACCGCTCCTTCTTCTTCGGCCGCAGCGAACTTTCGGCCATCCGGCGCCTCCTGCCCCCTCACCAGAGCCAGTGCTCCAGCTTCGATGTCCTGACCGCGTGCCTATGGAGGTGCCGCACCCTGGCCCTGCAACCCGACAGCGACGAGGAGGTCCGCATTATATGCATCGTGAACGCACGCTCCAAATTCAACCCTCCTCTGCCAGAAGGTTACTATGGTAACGTTTTTGCTTTCTCCGTGGCGGTTACGACTGCGGGAAAGTTATGCGAGAATCCGTTGGGGTATGCTTTGGAGTTGGTGAGGAAGGCGAAGGCGGATGTGAGCGAGGAGTACATGCATTCGTTGGCAGATCTGATGGTTACTCGAGGACGGCCTCACTTCACGGTGGTGAGGTCGTATCTGGTGTCGGATGTGAGACGAGCGGGGTTCGAAGACATTGATTTCGGGTGGGGTAAAGCTGTGTATGGAGGACCGGCGAAAGGCGGTGTTGGAGCCATTCCTGGTGTGGCTAGCTTTTACATACCCTTCAGAAATGATAAGGGAGAAGAAGGTTTGGTGATGCCAGTTTGCTTACCCTCTGAAGCCATGCAAAGGTTTGAGAAGGAGTTGGACTCTGTGCTCAACAATCGCCTTCCACCAACTATCAATACTATTTCTTCTTCAAATTCCAGGCAGCTCCTTCTTTCTTCCTTGTAG 1497 0.5377 MGCGGISSIIYTSAVGCISSTSVFILFPFCSFSFRIMDTSLVFTVQRREPELIAPAKATPREVKLLSDIDDQDGLRFQIPVIQFYRYDPALAGRDPVGVIREALAKTLVFYYPFAGRLREGAGRKLMVDCTGEGVLFIEADADVTLAQFGHALQPPFPCWENLLYDVPSSQGVLHTPLLLIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMNAVGEIARGRQEPSVPPVWRRELLNARDPPRVTCIHREYDVVPDTKGTIIPVDDMAHRSFFFGRSELSAIRRLLPPHQSQCSSFDVLTACLWRCRTLALQPDSDEEVRIICIVNARSKFNPPLPEGYYGNVFAFSVAVTTAGKLCENPLGYALELVRKAKADVSEEYMHSLADLMVTRGRPHFTVVRSYLVSDVRRAGFEDIDFGWGKAVYGGPAKGGVGAIPGVASFYIPFRNDKGEEGLVMPVCLPSEAMQRFEKELDSVLNNRLPPTINTISSSNSRQLLLSSL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00015 498 PANTHER ACYL TRANSFERASE 4 43 473 - -
Vimu3g00015 498 Pfam Transferase family 45 470 - -
Vimu3g00015 498 Gene3D - 40 252 IPR023213 -
Vimu3g00015 498 Gene3D - 256 470 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00015 Vimu-Chr3 110599 112310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00015 45 470 Monolignol Biosynthesis Gene Families AT5G48930 31.532 6.76e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00015 K19861 - gmx:100797017 787.334