Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00013 ATGCTGCTTCAGAAGAATGGTTTGCGTAAGAAGAATCCTTCAATTTCTGTTGTTGCTACTCTGTTTGGAGATGGGGAAGATGTTGCATGGCTAGAGAAGAATGATTTTGCTGACTGGGCAGAAGAAAAATCTGATAGAATTTTAGGAAGTGACAGCTTTGATGATTCTCAACGGAGAGCAATTGCACTGGGTTTGAATAAAAAGAGGCCTGTGTTGGTTATCCAAGGCCCTCCCGGTACAGGCAAGACTGGTTTGCTCAAGCATCTTATAGTATGTGCCGTTCAGCAAGGTGAACGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTAGATAACATGGTTGAAAAACTTTCTAATGTCAGATTAAATGTTGTGCGGGTTGGAAATCCAGCCCGGATATCAAAAACAGTGGCATCGAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAATATGAGAGAAAGAAGTCAGATTTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCGGGCATACGGCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGATAGTTAATGAAGTTCTATCCAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTTTGATCCGAAGACTAGATACTTTTGACTTGGTCGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAAGGTAAGCGGTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATACTATCTAGAAAGGCCTTGGAAGGTGGTCTAAGAATATCTCTATTGGAAAGAGCTGCAACTTTACATGAAGGGATTCTCACCACTAGGTTAACTACACAATACCGAATGAATGATGCTATTTCTAGTTGGGCTTCGAAGGAGATGTACGGAGGATTGTTGAAGTCCTCTGAGACTGTATCTTCTCATCTTCTTGTAGACTCTCCTTTCGTCAAGGTAGTATGCCCATCAATGATATCTTCATCTTCATTGAAGTGA 1056 0.4205 MLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNDFADWAEEKSDRILGSDSFDDSQRRAIALGLNKKRPVLVIQGPPGTGKTGLLKHLIVCAVQQGERVLVTAPTNAAVDNMVEKLSNVRLNVVRVGNPARISKTVASKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQIVNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLRISLLERAATLHEGILTTRLTTQYRMNDAISSWASKEMYGGLLKSSETVSSHLLVDSPFVKVVCPSMISSSSLK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00013 351 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 11 342 - -
Vimu3g00013 351 Pfam AAA domain 279 332 IPR041679 -
Vimu3g00013 351 CDD DEXXQc_SMUBP2 52 302 - -
Vimu3g00013 351 Pfam AAA domain 53 269 IPR041677 GO:0004386
Vimu3g00013 351 Coils Coil 154 174 - -
Vimu3g00013 351 SMART AAA_5 68 283 IPR003593 GO:0016887
Vimu3g00013 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 343 IPR027417 -
Vimu3g00013 351 Gene3D - 3 300 IPR027417 -
Vimu3g00013 351 SMART ultradead3 49 301 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00013 Vimu-Chr3 98164 99219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00013 47 242 Core DNA Replication Machinery Family AT1G08840 27.500 3.13e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00013 - - vum:124845912 665.996