Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03220 ATGTCATATGGAATTCCGTTTAATTTCACCTGCCTTTCGTATACTTTTGGATTTTATGGCGAGAAAGAATGGTACTTTTTTTCTCCTCGGGAACGCAAATACCCCAACGGCTCACGACCGAATTGGGCCACCGGAGCCGATAAATTGATCGAAAAGCTGAAGGCGCTTGAGATAAAGAAAGCTCTGGTTTTTTACTCGGGAAAAGCCCCCAAAAGAGAGAAAACCAATTGGATCATGCACGAATATCGGCTGGCCAATGTTGATCGATCAACCTCCAAGAAAAAACAACCAGATGGTACGTTTAGATTTGATTTGCTTTGTTTTATTTTGTTGTTTTGA 339 0.413 MSYGIPFNFTCLSYTFGFYGEKEWYFFSPRERKYPNGSRPNWATGADKLIEKLKALEIKKALVFYSGKAPKREKTNWIMHEYRLANVDRSTSKKKQPDGTFRFDLLCFILLF 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03220 112 ProSiteProfiles NAC domain profile. 1 112 IPR003441 GO:0003677|GO:0006355
Vimu2g03220 112 Pfam No apical meristem (NAM) protein 19 84 IPR003441 GO:0003677|GO:0006355
Vimu2g03220 112 SUPERFAMILY NAC domain 16 87 IPR036093 GO:0003677|GO:0006355
Vimu2g03220 112 Gene3D NAC domain 7 110 IPR036093 GO:0003677|GO:0006355
Vimu2g03220 112 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03220 Vimu-Chr2 39628965 39629461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03220 16 109 NAC Transcription Factor Family AT1G01720 66.346 2.26e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu2g03220 NAM 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03220 - - gmx:100814504 132.109