Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g03204 ATGAAGAAAGATGAGGAGTTTTTCCTGCAGAGGCTTTCTTGTGGAATATCTATATTAAAGAGTAACGATCGGATTCTTCGACTAAGAGGGCCTTTAAATGTTCCAGATGAAATACCTTGTAACAGCCATGAGACATATGATGAAAGTTTACCAAGTGTTCCATATAAACATCTTTTTGACGACATTGATGCTTTCCCCAAGAGACAACTTGAAGACGATGAACAGAACCAGATAAAAACTAGGCCATATGAGGAAGAGGGTTGCTCGAATGATAAAGCCAATATCAATGAAAATATATATCCGACAAGTCTGAATCACCTAAGCATGGATGGAACAGAAATAAATAGCAATCAAATGATAGATAAAATAGAAAGAGCTGAGCAAGGTCACCATCATGAACAGATGCAAAGCATGTCCCTTGAGATGGTGGGGGACACAGCAATTATAATTAAAACTGATCAAGCAACTGCTCAGGAAATAGCTGATCAACCAAGCAAAGATGAAGAGAGGAGAAACAACTACTTCCATGGTGAGAACTGGGACTGGAGCAATCCAGAAAAGAGTGAGGAAATGATTGATCAACCAATAGATGATTTGCCGAGTCAGAATCATGCACAGACATCTAGCATTTTCAGTGCTGCTACATTGGATGGTGGAGAGCAAGAGAAAAGTATTTTGGAAAATTCAATGTACAATTTCTGCTCTGTCTGCAAAACTAGACGACCTAATATTGAGGGCCAAAAGGAATTTACTTATGAAGAACTCCTAGCAGCCACAGATGCATTTTCGTTGAAGAACTGTCTCTCCAAAAGTGGATCTCTATTCACTTTCAGAGGCCAGATGGAGGTAGGGATGAAAGTAGTGGTTAAGAAGCATGATGCCACTAACACTCAAGTAAGGGAGAAAGCGAAGTCAGAAATCCAAACCATCCTCAAAGCTAGACATAAGAATGTGATTATGCTCTTGGGCTCATCTACAGCAGAATCTTTCCTGTTTACTGTATATGAGTATGCTTGCAATGGTTCACTTGACAAATATCTATCAAAAGAAAGCTCCAGACCATTGACCTGGAAAGAAAGGAAAAGAGTGGTAATAGGCCTTGCCAGAGGCCTCAAGTATCTACATGACAATAACATTGTTCATTGCAATATAAAACCAAGCAATATTCTTCTAACACATGACTTCAATTCACTGATTGGAGATTACAACTTTGGGAAAGAACAAGAATTGAAGTCCTACAAAAATAAAAACAGAGAGGATTATGAATATGTAGCGCCAGAATTCCAGGAGAAAGGGAAGTTATCATCAAAGGCAGATGTATACTCTTTTGGTGTAGTTATTTTAGAGTTGATCGCTGGGCGAAGGACTACGGATTTCACGTCAGAACATAAAAGCCTTGTTGAATGGGCAAAGCCTCTACTTAAAAAGAAGAATTACTCAGAATTGGTGGATCCCATAATCAGAAACTCATACGAAGAGGATCACCTTCGTTGGATGGTCCAAGTAATAACAGAATGTTTGGAAAAGAATCCTAAGAAAAGGTCATCAATGAATATGGTTGTTTCTGCATTACAAGGCATAGCAGACAGTGAACTCGACCACATGACAGACGATAATACTCCAGCTGTATCTGATTCGAGAAGTGTGCAAGAAATAAATGGTTCTCAAGATGTGGGTTCAACAAAAACTAAAGCTGATCAGCAAAATCAGAAAGTCGAGCAAATTGAGAGCAAACTCGGTGGGGAAAAAAATAAGTTAAGACTAACAGTTAAGAATAATCTCTTTTACAAAGAAAACGAGGGAAACTCTGATAAACTCAGACATAATGAAGAACAGAAGCAAAGCAGGTCTCGAGGGGAGGATAGGAGCTCAGGAAAGATGATAACGAATGACCACAGAATAGACGAGACAGAAGTTGATAAGCTGAATGAGTTTGAAAACCAGATTCCAAGCACACTCCATATGGAGAGCATCACAACACAAAAAATTAGTTTTGATGGCTTAATGGGTCACACAAAAGTTGACCAACTGAGCCAAGACCAAGAAGGAAATAACTTTGCTAAAATGATGGAGGTAGGCTTAATTCCAGCAACTATCAGTGCAACGATAGATCAAACAGAAGATGATCAGCCGGTCCATGATAAAACTCAAACACAGAGAAGCTTTCGTGAGAACTTACAGGATGGATGTCAAGGTGAAATAGTTTTGGAGAATTCGAAGTCCTCTGCATGCTCTATTTGTAGAAGTAGACGACCAAACAATGCATGCTCAAAGGACTTTACTTATGATGAACTTCTAGAAGCTACAGAAGGATTTTCCACTGAGAACTCTCTATCTGTAAATGAAGATGGACCTACTTTCCAAGGCCTTCTAGAGGGACGGGTAAAAATTGTTGTTAAGAAATATCAAGTCAACACCTCCCAAGAACAGAAGATGATAAACTCAGAAGCAAAGCTGCTCATCAGTGCTAGACATAAAAATGTGGTCATGCTGTTAGGTTTATGTACAAATGAAAGCCAACTGATGGTTGTGTTTGAGAAAGTATGCAACGGTTCACTTGACCAGTACCTAACAAGGGGACGTTTCGAGTCATTGACTTGGAAGCAAAGGCTGAAAGTAATAATGGGTACTGCCAGAGGTTTAAAGTACCTACATGGGAAAGACATAATCCATGGAAATATAAAACCAAGTAATATTCTTCTAACACACGAGTTTGACCCAATGATTGGAGATTTCCACTTCGGACAACAGAAAGTTGGACCAAAGAAATCCAGAAAAGATAAAAGTGTAAGAAATTCTGGATATGCAGCACCTGAGTATCTGGAAAATGGAAAACTATCTTACAAGACAGATGTATACTCCTTTGGAGTGGTTCTTTTGGAGCTGATCAGTGGCCGGAGGGCTGCGGACAAATTACCAGATGGAAAAAGCCTAGCGAGGCCCCTACTGACAGGAAAGAAGTACAGCATGTTGTTGGATGGGAAAATCAGTAACTCTTGTGAAGAAGAAAAACTTGTATGGTTGGTCCAAGTAACAGAACAATGTCTCAAAAGGAATCCTAATGATAGATATTCAATGAATGTGGTCCTATCTTCCTTACAAGACATAGAAGAATCAACTGAGTGTTATGTAATTCAAGATTCTTCTCTAGAAAAGTCATATTCAAATGGTCTCCCCACTACACAAGGTCAAATGAAGGCCGATCTAGGGAAGAAACAGGAACAGGAATTGATCGACAGAAACCAATACAAGGAAGAAAGCAGTCCAAGATTGACAGTCAAAACCAATCACATGAAAGGTCATAGAAATGGAAATCAGATTATACAGGGTGGAGAAGATGTGCAGAGGAGTCCTTATGAGGAGATGTTCGGGGTAAGACCTATCAGCAATGACATGATTGATCAGATAAACCCTGTCCAACAATTCCAGGAAAAACTGCACATTAAGGGAAGCTTTGAGATAGAAGAAATGAGTAAAAATGTAGATAAACAACAAAAGGTGAGCAAGGATAAAAAACAAATACTGGGAAGCTGTGATGATAGTTTATTGAATGGGAATGAAGGCAAAATCATTTTGGGAAATTCAAAGTCTTATGCTTGCTCTATCTGCAAAAGTAGGCGACCCAACAGTGGATTGCAAAGGAAATATACTTATGAAGAGCTTCAAGCTTGTACAGAAGGATTTTCAGTTAAGTACTCTCTATGTGAAGGTGAATATGGACCTGCTTTCAGAGGTCAGCTAGAGAATAACCAGGAAATAGTGATTAAGCAACATGCGTTCAGAAGCTTACAGGAGCAGAAGGTGTTCATGTCAGAATTCCAATTGCTTATAAATGCCAGACATGAAAACGTGATTATGCTGTTAGGTTCATGCATACGATTAAGTCAATTGCTGATTGTGTATGAGAAGGCATGCAACGGATCTCTTGACCTGTACTTATCAAGAGAAAGTGGCAGAACACTGACTTGGGGAGAAAGGGTGAAAGTTGCAATAGGTGTTGCCAGAGGTCTAAACTATCTACATGAGAATAATATAGCACATGGAGGAATAAAACCAAGTAACATTCTTCTAAATCATGAGTTGAAACCACTGGTAGGAGACTTTGTCTTTGGAAAAGAAAGATGTGAACTGAAAAATCTCAAAAGACTTAAAAGAATGAGGAATTGTGGACGAACTGCACCAGAGTGTTGTGAGAATGGAATACTATCGACTAAGGGAGATGTATACTCTTTTGGTATAGTTCTTGTGGAGTTGATCACTGGCCGTATGATTTCAGAAAAAGTATCAGGAGAGAGATGTCCCACTGAATGTATAAGGTCACTTCTTGAAGAACAAAAGTTTCTACTGTTGGTAGATCCCAAAGTCAGCAGCTCCTATGATGAGCAAGAACTAGTTTCATTAGTCCACGTGATAGAAAACTGTCTGAGAAAGAATCCAGAAGAAAGGTTTACAATGGATATGGTTGTCTCTGCACTTCCATCTATAGTAGATTGCAGTGACATATATGCAAAGGAAGACTTTTCACCAGAAAACTCGCATGTTTCAGAAGTAACAAACTCAAAAGTGAAGGAGGAACCACCAAATGAAGAAGATTTAAGCATAGAGAATAGTGAAGAAAAAGGGGACAACATAACTTACATTGGAGGCAATGAAACAGAAATACGTCAAGAGTGTGACATCAACCCAACTGGTTGTGAAAATACTAAGGAAACAGAAGAAAAAGAAAGCTTAAGCACCAAGATATGTTGGGAAGGTTGTTCATCCTATAGTGGAGCTAGAGACTTTTATCTCCAAGGGATCAAAGAGTACACAGCATGTGAAGAACTTTTCGGCTTTTGTGATTTAATTTGA 4851 0.39 MKKDEEFFLQRLSCGISILKSNDRILRLRGPLNVPDEIPCNSHETYDESLPSVPYKHLFDDIDAFPKRQLEDDEQNQIKTRPYEEEGCSNDKANINENIYPTSLNHLSMDGTEINSNQMIDKIERAEQGHHHEQMQSMSLEMVGDTAIIIKTDQATAQEIADQPSKDEERRNNYFHGENWDWSNPEKSEEMIDQPIDDLPSQNHAQTSSIFSAATLDGGEQEKSILENSMYNFCSVCKTRRPNIEGQKEFTYEELLAATDAFSLKNCLSKSGSLFTFRGQMEVGMKVVVKKHDATNTQVREKAKSEIQTILKARHKNVIMLLGSSTAESFLFTVYEYACNGSLDKYLSKESSRPLTWKERKRVVIGLARGLKYLHDNNIVHCNIKPSNILLTHDFNSLIGDYNFGKEQELKSYKNKNREDYEYVAPEFQEKGKLSSKADVYSFGVVILELIAGRRTTDFTSEHKSLVEWAKPLLKKKNYSELVDPIIRNSYEEDHLRWMVQVITECLEKNPKKRSSMNMVVSALQGIADSELDHMTDDNTPAVSDSRSVQEINGSQDVGSTKTKADQQNQKVEQIESKLGGEKNKLRLTVKNNLFYKENEGNSDKLRHNEEQKQSRSRGEDRSSGKMITNDHRIDETEVDKLNEFENQIPSTLHMESITTQKISFDGLMGHTKVDQLSQDQEGNNFAKMMEVGLIPATISATIDQTEDDQPVHDKTQTQRSFRENLQDGCQGEIVLENSKSSACSICRSRRPNNACSKDFTYDELLEATEGFSTENSLSVNEDGPTFQGLLEGRVKIVVKKYQVNTSQEQKMINSEAKLLISARHKNVVMLLGLCTNESQLMVVFEKVCNGSLDQYLTRGRFESLTWKQRLKVIMGTARGLKYLHGKDIIHGNIKPSNILLTHEFDPMIGDFHFGQQKVGPKKSRKDKSVRNSGYAAPEYLENGKLSYKTDVYSFGVVLLELISGRRAADKLPDGKSLARPLLTGKKYSMLLDGKISNSCEEEKLVWLVQVTEQCLKRNPNDRYSMNVVLSSLQDIEESTECYVIQDSSLEKSYSNGLPTTQGQMKADLGKKQEQELIDRNQYKEESSPRLTVKTNHMKGHRNGNQIIQGGEDVQRSPYEEMFGVRPISNDMIDQINPVQQFQEKLHIKGSFEIEEMSKNVDKQQKVSKDKKQILGSCDDSLLNGNEGKIILGNSKSYACSICKSRRPNSGLQRKYTYEELQACTEGFSVKYSLCEGEYGPAFRGQLENNQEIVIKQHAFRSLQEQKVFMSEFQLLINARHENVIMLLGSCIRLSQLLIVYEKACNGSLDLYLSRESGRTLTWGERVKVAIGVARGLNYLHENNIAHGGIKPSNILLNHELKPLVGDFVFGKERCELKNLKRLKRMRNCGRTAPECCENGILSTKGDVYSFGIVLVELITGRMISEKVSGERCPTECIRSLLEEQKFLLLVDPKVSSSYDEQELVSLVHVIENCLRKNPEERFTMDMVVSALPSIVDCSDIYAKEDFSPENSHVSEVTNSKVKEEPPNEEDLSIENSEEKGDNITYIGGNETEIRQECDINPTGCENTKETEEKESLSTKICWEGCSSYSGARDFYLQGIKEYTACEELFGFCDLI 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g03204 1616 MobiDBLite consensus disorder prediction 1055 1074 - -
Vimu2g03204 1616 MobiDBLite consensus disorder prediction 1509 1535 - -
Vimu2g03204 1616 Gene3D Phosphorylase Kinase; domain 1 735 846 - -
Vimu2g03204 1616 Gene3D Phosphorylase Kinase; domain 1 1195 1302 - -
Vimu2g03204 1616 SUPERFAMILY Protein kinase-like (PK-like) 757 1040 IPR011009 -
Vimu2g03204 1616 SUPERFAMILY Protein kinase-like (PK-like) 247 537 IPR011009 -
Vimu2g03204 1616 Pfam Protein tyrosine and serine/threonine kinase 793 1032 IPR001245 GO:0004672|GO:0006468
Vimu2g03204 1616 Pfam Protein tyrosine and serine/threonine kinase 1231 1492 IPR001245 GO:0004672|GO:0006468
Vimu2g03204 1616 MobiDBLite consensus disorder prediction 541 575 - -
Vimu2g03204 1616 MobiDBLite consensus disorder prediction 599 630 - -
Vimu2g03204 1616 Gene3D Transferase(Phosphotransferase) domain 1 339 550 - -
Vimu2g03204 1616 Gene3D Transferase(Phosphotransferase) domain 1 1305 1514 - -
Vimu2g03204 1616 Gene3D Transferase(Phosphotransferase) domain 1 848 1054 - -
Vimu2g03204 1616 MobiDBLite consensus disorder prediction 533 578 - -
Vimu2g03204 1616 ProSiteProfiles Protein kinase domain profile. 262 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03204 1616 Gene3D Phosphorylase Kinase; domain 1 235 337 - -
Vimu2g03204 1616 ProSiteProfiles Protein kinase domain profile. 1228 1495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03204 1616 Coils Coil 565 585 - -
Vimu2g03204 1616 ProSiteProfiles Protein kinase domain profile. 772 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03204 1616 SUPERFAMILY Protein kinase-like (PK-like) 1211 1492 IPR011009 -
Vimu2g03204 1616 Pfam Protein kinase domain 281 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu2g03204 1616 FunFam Proline-rich receptor-like protein kinase PERK8 1190 1303 - -
Vimu2g03204 1616 FunFam Proline-rich receptor-like protein kinase PERK8 224 337 - -
Vimu2g03204 1616 PANTHER OS01G0253100 PROTEIN 191 531 - -
Vimu2g03204 1616 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 338 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g03204 Vimu-Chr2 38883112 38900188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g03204 250 524 Trihelix Transcription Factor Family AT5G38560 36.458 8.52e-50 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu2g03204 PK_Tyr_Ser-Thr 2.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g03204 - - vun:114188408 2704.47